HsaALTA1052356-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000188163 | FAM166A
Description
family with sequence similarity 166 member A [Source:HGNC Symbol;Acc:HGNC:33818]
Coordinates
chr9:137245307-137245853:-
Coord C1 exon
chr9:137245639-137245853
Coord A exon
chr9:137245405-137245557
Coord C2 exon
chr9:137245307-137245404
Length
153 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGC
5' ss Score
4.44
3' ss Seq
AGGCTGCCCTGTTGGTACAGGTC
3' ss Score
5.88
Exon sequences
Seq C1 exon
CTATGCCGGCTTCTTTCCGCAGCTGCGCTACCAGGTGGGGAACACCTATGGGCGTACCACGGGGCAGCTGCTCACAGACCCCAGTGTGCAGAAGAGCCCCTGCTCTGTGCTGTCCCCCATGTCCAAACCCAAGTTCATTGAGGACTTCAGCCAGTCCAAGCCCCCGAGGGTTCCCTGCCAAGACCTGACGGAGCCCTACATCCCCCACTACACCA
Seq A exon
GTCTGAAGCCCTCTAAGAACTTTGAGATTCTGGGCCAGCTCCCACCCTTGGAGGTGGACGCCCAGGAGCCGCCAGGGGTAGAGAACATACCCAGACAGATTCTGCTGCCTGCAGGCTTCACGCCCGACACCCCGCACCCTCCGTGCCCACCAG
Seq C2 exon
GCAGGAAGGGAGACTCCAGAGACTTGGGACACCCAGTATACGGGGAAGAGGCCTGGAAGAGCGCCACTCCTGTTTGCGAGGCCCCCAGGCAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188163-2-4,2-3,2-2-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.592 A=NA C2=0.679
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PD(89.6=82.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGCCGGCTTCTTTCCGC
R:
GGTGTCCCAAGTCTCTGGAGT
Band lengths:
248-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains