RnoALTA0014625-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010019 | Fam166a
Description
family with sequence similarity 166, member A [Source:RGD Symbol;Acc:1562762]
Coordinates
chr3:2439535-2440113:+
Coord C1 exon
chr3:2439535-2439749
Coord A exon
chr3:2439848-2440000
Coord C2 exon
chr3:2440001-2440113
Length
153 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGC
5' ss Score
4.44
3' ss Seq
GGGCTACCCTGTCTGTACAGATC
3' ss Score
6.86
Exon sequences
Seq C1 exon
CTATGCTGGTTTCTATCCTCAACTGCGCTACCAGGTGGGAAACACCTATGGCCGCACTACTGCACAGTTGCTCACAGATCCCAGTGTACAGAAGAGCCCCTGCTCTGTTCTGTCACCTATGTCCAAGCCCAAGTTCATTGAGGACTTCAGCAAATCCAAGCCACCATGGATGCCCTGCAGGGACCTGACAGAGCCTTACATCCCCCACTATACCA
Seq A exon
ATCTGAAACCCTACAAGAATTTCGAGATTCTGGGCAAGCTCCCACGCCAGGAGGTGGACACCCAGGGGATGCCACAGGGAGAGAACATATCCAGACATGTTCCACTACCTGCGGGCTTCATGCCTTATCCCCCCTACCCACCATGCCCTCCAG
Seq C2 exon
GCAGAAAGGGGGAAGCTAGAGACCTGGGCCATCCAGGTCTACTGCTGGCATATGGGGAAGAGGCTTGGAAGAATGCAGCACCTCTTCAGGAGACCCCAGGGAGGTACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010019-7-9,7-8,7-7-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=NA C2=0.427
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PD(89.6=82.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACACCTATGGCCGCACTAC
R:
GCTGCATTCTTCCAAGCCTCT
Band lengths:
255-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]