MmuALTA1016253-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026969 | Fam166a
Description
family with sequence similarity 166, member A [Source:MGI Symbol;Acc:MGI:3605773]
Coordinates
chr2:25220134-25220712:+
Coord C1 exon
chr2:25220134-25220348
Coord A exon
chr2:25220453-25220599
Coord C2 exon
chr2:25220600-25220712
Length
147 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGC
5' ss Score
4.44
3' ss Seq
GGGCTACCCTGTCTGTACAGGTC
3' ss Score
7.65
Exon sequences
Seq C1 exon
TTATGCTGGTTTCTATCCTCAACTGCGCTACCAGGTGGGAAACACCTATGGCCGCACCACTGCACAGTTGCTCACAGATCCCAGCGTACAGAAGAGCCCCTGCTCTGTTCTGTCACCTATGACCAAGCCCAAGTTCATTGAGGACTTCAGCAAATCCAAGCCACCATGGATTCCCTGCAGGGACCTGAGAGAGCCTTACATCCCCCACTATACCA
Seq A exon
GTCTGAAACCCTACAAGAATTTTGAGATCCTAGGCCAGCTCCCACGCCAGGATGTGGACACCCAGGGGCCGCCACAAGTAGAGAACAGACAGGGACCACTGACTGCAGGCTTCATGCCTTATCCACCCTACCCGGCATGCCCCCCAG
Seq C2 exon
GCAGAAAGGGGGAAGCTAGAGACCTGGGCCATCCAGGTCTACTGCTGGCATATGGGGAAGAGGCTTGGAAGGATGCAGCACCTCTTCAGGATACCCCAGGGAAGAACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026969-8-5,8-4,8-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=0.632
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PD(89.6=82.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTGCTCACAGATCCCAGC
R:
GGGGTATCCTGAAGAGGTGCT
Band lengths:
248-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types