BtaINT0059579 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032509 | FAM166B
Description
Bos taurus family with sequence similarity 166, member B (FAM166B), mRNA. [Source:RefSeq mRNA;Acc:NM_001038513]
Coordinates
chr8:60196395-60197146:-
Coord C1 exon
chr8:60196949-60197146
Coord A exon
chr8:60196653-60196948
Coord C2 exon
chr8:60196395-60196652
Length
296 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGACTCTTTTGGCTACACAGGGT
3' ss Score
4.97
Exon sequences
Seq C1 exon
GCTTCACTGGTTATGTGCCCCGTGCTCGCTTCCTCTTCGGCTCCAGCTTTCCTGTGCTCAGCAACCAGGCGCTGCAGGAATTTGGAGAGATGAAGTCACCGGGCAGGTCCCAGAAGGATCCTAAGCATCTCCCTGCACTGTCCCGGACCTACCCTCAGCACCTGGGCCTTTTACCTAAATACGGGGGCTATGTGCCAG
Seq A exon
GTGAGGATGGCCCAGGAAGGAGGCTTTGGGGACTGGGATATTTGTGTGTGTATGTGTGTGAGTGTGAGTGAGTGATAGGTGGAGGTGGTTTGGGGGATGGGAACTAGTAGATACAGGGAGGGGTCCTTGGATCGTGAGGTTCAGCTTTATCACTGGGCAGAAAAGGAACTGACATAGCTCCTAGTGGGGAGTGGGGACCAGAGTTTGGAGGATAACTTGGAGGTTCTGGGTAACTGGCTGAGAAATAACTTTTCTGTGCCTCTGGCTACAGATGACAGACTCTTTTGGCTACACAG
Seq C2 exon
GGTATAAGTTCCAGTTCGGCCGCACGTATGGGCATCTCACCCAGGATGCTCTGGGTCTCAGCACCCTCCAGAAGCAGCTCCTGGTATAGGTACCTGGCATTTAAGTTCTCTCTTCCCTTGTCGTCCTATCCCAGCCATCCTTTTGGAAAGAAGAAAGGCGGGTTGGCCGGTGGGAGGAAGCACAAAGAGAGAACAGTTTGGAGGCCGAGCACCTTTTTTATTAATAGGTGTAATAAATAAATAAATAAATACATAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032509:ENSBTAT00000046106:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PD(89.5=76.1),PF106294=DUF2475=PU(34.2=19.4)
A:
NA
C2:
PF106294=DUF2475=PD(63.2=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGCTTTCCTGTGCTCAG
R:
ATGGCTGGGATAGGACGACAA
Band lengths:
296-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]