HsaINT1013056 @ hg38
Intron Retention
Gene
ENSG00000215187 | FAM166B
Description
family with sequence similarity 166 member B [Source:HGNC Symbol;Acc:HGNC:34242]
Coordinates
chr9:35561831-35562528:-
Coord C1 exon
chr9:35562380-35562528
Coord A exon
chr9:35562096-35562379
Coord C2 exon
chr9:35561831-35562095
Length
284 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AGACTCTCTTGGCCACACAGGGT
3' ss Score
5.07
Exon sequences
Seq C1 exon
CTTTCCTGTGCTCACCAACCAGGCACTGCAGGAATTTGGGCAGAAGCACTCACCAGGCAGTGCCCAGGACCCCAAACATCTCCCCCCACTTCCCAGAACATACCCTCAGAACCTGGGTCTTTTACCTAACTATGGGGGCTACGTGCCAG
Seq A exon
GTGAGAAGAGCCCCCGGGGAGGCTTTGGGGACTGGAATGTTTGTTTGTATGGGTATGGGGTGGGTTGGGTGGTTTGTGGGGGTTGAAACTAATAGATATGGGAGGGCTCAGATCATGTGGTTCAGCTTTATTATCAGGCAGAAAAGGAAACCGAGGTAGCTACCCACAGTGGGGAATTAGGGCCAGATTTTAGAGGGCTGTTTGGAGGTCTAGCCAACTGGCTGAGAATTAAATGGCTTTGCCATGCCACTTGCTACATGTGACAGACTCTCTTGGCCACACAG
Seq C2 exon
GGTATAAGTTCCAGTTTGGCCACACATTTGGCCATCTCACCCATGATGCTCTGGGCCTCAGCACCTTCCAGAAGCAGCTCTTGGCTTAGGCCACTGGACATCAAGTTCCCTTCCCTTTTCATCCTATCCCAGCCATCCTTTTGGAAGGGAGAGAGGTGGGTGGGAGGGTGGGAGGGTGGGGGAACACAAAGAGAAAATGGTTTGGAGGCTGAGCACCTTTTTTATTAATAGGTATAATAAATAAATAAATAAATACATAAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215187:ENST00000492890:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PD(89.8=80.3),PF106294=DUF2475=PU(35.1=19.7)
A:
NA
C2:
PF106294=DUF2475=PD(62.2=76.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTGTGCTCACCAACCAG
R:
CCCACCTCTCTCCCTTCCAAA
Band lengths:
308-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains