DreINT0066285 @ danRer10
Intron Retention
Gene
ENSDARG00000100292 | fam166b
Description
family with sequence similarity 166, member B [Source:ZFIN;Acc:ZDB-GENE-070209-41]
Coordinates
chr10:17119213-17119931:-
Coord C1 exon
chr10:17119710-17119931
Coord A exon
chr10:17119633-17119709
Coord C2 exon
chr10:17119213-17119632
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CTGTCACTTTATGTCAACAGGGT
3' ss Score
8.27
Exon sequences
Seq C1 exon
GTTTTACTGGTTATGTCCCCAAAGCCCGGTTTCTCTTTGGTACTGGATATCCTACCATCACCAATAAGGCATTGATCCAGTTTAGCAAGGAAATGAAGGCAGGTCCGGCATCTTTGCAGAAATATAGCCTGCAGGAGGAGGATTCCTCCAACTTACCTCTGATACCCACAATATACCCCTCCAAAACAGGTCTCCTGCCATCCTACACAGGCCACATACCAG
Seq A exon
GTCAGTGAAGATAGTCATATATTAGCAGAAATTGTGCTGTTATAGAGCAAAATAAATCTGTCACTTTATGTCAACAG
Seq C2 exon
GGTACAGATTTCAGTATGGCCATACATTTGGGAAACTCACCCATAATGCTCTGGGTCACACTGCTTCACAGAAGAACGCAGGGGCAATTAGGCTGAGCTGAAGGTCTAACAGTTCACACACAACTCACCTAAAGACAATTAAAGTAATATGGTCAACATGTTGATTTACCATTGTCATGTATTGTCAGATTCACCATACTGACTTTAAAGTGCTGGAATTTGTGTGGTTTAATATTGGCATGTAAATGATCAACAACTTTTGATTCTGTAAACTACAGAAATGCAATTTGTTTCAAATTATATTCATTTAACAAACACTTTCAATTCAAATCACACAAAACAAACACTGATGACTCAACAAATCTTTATTATCACAAGGGTTCAATCAGGCACAACTTCATCAGGAAATAAGAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100292:ENSDART00000170083:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PD(89.2=77.3),PF106294=DUF2475=PU(31.7=17.3)
A:
NA
C2:
PF106294=DUF2475=PD(65.9=79.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCCAAAACAGGTCTCCT
R:
AGGTGAGTTGTGTGTGAACTGT
Band lengths:
177-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]