BtaINT0060328 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031044 | FAM73A
Description
family with sequence similarity 73, member A [Source:HGNC Symbol;Acc:HGNC:24741]
Coordinates
chr3:67113762-67116449:-
Coord C1 exon
chr3:67116313-67116449
Coord A exon
chr3:67113889-67116312
Coord C2 exon
chr3:67113762-67113888
Length
2424 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TTCTGTCCATCCAATTTTAGGTC
3' ss Score
11.73
Exon sequences
Seq C1 exon
GTTCAAGTTGTTCCAGTAGCAGACAGAATTTGACATTATCTTTAAGTTCTGCCAAAGACAAAGGATCTCAGTCTTGTAACTATGTTAATGGAGGACTCTTCAGTAAATACTCGGGTTCTGCACAGAGTTTAGCCTCT
Seq A exon
GTAAGTAAACAATTTATTAATTTTTTCTTTTAATTTTAATTATATATCTATCATTATATATTGATTTAAATGTCATACAATTAGATAGCTTTTAGTGTGGAGAGATGGAGAAGGGACAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGATCCTGTTAGGCTGCAATCCATGGGGTCGCTGGGAGTCGGATACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGATCTTGCCTGGAGAATCCCAGGGATGGGGGAGTCTGGTGGGCTGCTGTCTATGGGGTCGCACAGAGTCGGACACAACTGAAGTGACTTAGCATAGCATAGCATTAGCATGGAGAGAACCTTAAGAAATCTGGTTGATCCTGTTCCTTCAGACAAGTAAAATTACCTTTTTGTGAAATATTCAGCTAGCTCGGTTCCAGGTTTTTTTGAGTCAGGTAATGTGATCCTATGGGGTCCTGTGAGGATGGTGTTGGTATGGAAGTGTTGCTTCAAAGCTAGGTATTCTACAAAAAGCTAAAAGATGCAGCCAAACGTGGTGTAGGTTACAAAAACTGCTTGATGAACCTGCTTATGTAGCAGTATTTGGCTTGCTGAAGCCAAGTATGGAGTCTTTACCTCTTCCTTTATACCATTAACATAGTATTGATTGACAGGTGAAGAGTAAAGTTAATGTTTATTCAAATATAATATAGTTTAAAAGTTACTTTACATAACAGGTAGGATATGCACTTGCTACTAAATAATGTACATGAAAAATGTGCTCCTAATCTTCTCAATTTCCCTCCTTAGAGATGAACACTGACAGTTTCTTATGTGTATTCCAGGGAGAATATGCCTCTAACATCATGATTATTCATTTAAAAAATAGTTTAATAGAATACTATAATCTGTTCATACCTTGCTTCTGTATTTTATTGGAACAGATAGCTGCTCCTTTCTTAAATGCCTAAAAATATATCACATTTTAAAGGCTCTTCTGCTGTGCTGTGCTGTGTTGTACTTAGTCACTCAGTGATGTCTGACTCTTTGCGGCCCCTTGGACTGTAGCCCACCAGGTTCCTCTGTCCGTGGGAGGAACATTTAGATCAAAGACGTGCCCTTTCAATTCCTCTGGGAAACTGAGTAGGATAATGAAGTATATGCCCTTTCTATAATCTGGACCTCCTCTGTGTCAGAGAGGTACCTCTCTTAAATTTTCTGAACTGAAAATTGAAGCTGTTCTTGACTAGAGAAAAGAAGTTTTATGATAACAGTATAAATAATTAGTCTTTAGAATCACTTCGCTATCCATGCCTTCGCTGACCTACTTACTTACTCCGCTGTTAGGACTGTGAACCCAGATTTCTGCCTCTTAATGAGTGCCTGAGTGAGAGTCATAACAACAGGAGTAGAAAAGGAGGGGACAGGGTCCACAAGACTTGATAACTAGATATGAGAGGTGTGGGAAGAGAAGTTAAAGATGACTTCTTGTTACCTAGTTTGAGAAGTTATGGAGATAAAAGTAATTTTACTGAACTTGGGAGGAGTTTTTGTTTTGGGAAGATGGAAAGCTCTTTTTTCGTATTATCAGTTTGAGATGCCAGCAGGAGAGCCACGTGGAGTCATCAAATAGGCAGGTGGAAATGTGAGCTTAGATTTCTCAAAAGAGGGCAGAACTGGAGTTCAAGATTTGGGAGTCTTTGCAAAGAAGTGACAAATGATTGGCTCAGCAGACCTTGCTAGAGAAGTAAAGATGATAGAGGCTTTTCGATTTTCATTATTACAGCAGATAATCAGCATTGTAATAAGTTCTGAAAGGAAAGTAAGCTAGTTACCTCAAATCAAAGTAGGTGTGGGTAAAATTTATAAGTAAATACTTAAATGACAGTAAACTATAAAAATAGCTGCTTGATTTTTGATGGAAATAAATTCCCTGGTGGCTCAGTGGTAAAGACTCTGCCTACAGTGCAGGAGATGCAGAGATGTCGGTTTGATCCCTGAGTTGGGAAGATCCCCTGGAGAGGGAAATGGCAACCCACTCCAGTATCCTTGCCTGAAAAATCCCATGGACAGAGGAGCCTGGCGGGCTACAGTCTTTGGAGTCAGAAAAGAGGTGGATGTGACTGAGCGACTAAACAACAACAACTGGTTTATGTTCAAAATATTGTTCAACATGTATAATTTTGAGCAAATAAGTGTTCAGAGTACGTAGGGTCTTATGAATTCTAAGTTTGATTGAGTATAATCAGATTTATCTCTTCAGGTAGAAATCTCATGGGTTGTTCTACCAGGATTAGGATTTATGTAAATAATTTATAAATATAAAAGAACACAAAATACTGTTACAAAAGAGATTTTGAAGTAACTTCTGTCCATCCAATTTTAG
Seq C2 exon
GTCCAGAGTGTCAATTCTTGTCATAGCTGTGCTTGTGGCAATTCTAATTCCTGGGACAAAGCAGATGAAGATGATATTAAACTTGTTAATATTCCTGTGACGACTCCTGAGAACTTATATTTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031044:ENSBTAT00000043938:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(8.2=100)
A:
NA
C2:
PF102654=DUF2217=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]