RnoINT0092513 @ rn6
Intron Retention
Gene
ENSRNOG00000056332 | Miga1
Description
mitoguardin 1 [Source:RGD Symbol;Acc:1559958]
Coordinates
chr2:257540377-257542457:-
Coord C1 exon
chr2:257542321-257542457
Coord A exon
chr2:257540504-257542320
Coord C2 exon
chr2:257540377-257540503
Length
1817 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGA
5' ss Score
4.08
3' ss Seq
TCCATCGGTCTTTGTTTCAGGTC
3' ss Score
11.66
Exon sequences
Seq C1 exon
GTTCGAGCTGTTCCAGTAGCAGGCAGAACTTGACCTTGTCATTAAGTTCCACCAAAGACAAAGGGTCTCAGTCTTGCAACTACCCGAATGGAGGACTTCTCAGCAGATACTCGGGTTCTGCCCAGAGCTTGGGCTCT
Seq A exon
GTAAGAAAAGCATACATTGTTGTTTTGTTGTTATCGTTGTTGTGTTTGCTTACATACCTCTTATTGGCTTAAGTATCACATATGTGCTGCTCTTAATATAGAAAAAAGCTTAGGAGACAGTCTAGTTAAGTCCTTCCTTCCGCTGTTGGCTCCCAGTTGTGCTGTCACGTGCTATGGTCCATTTGGTCCTGTGAGAACAGCCTGTATGTGGTGCCCTGATGGAGAAGTCGATGCAGACATGTTTTCCTGGGCTGGAGGTGATAGCCTGAGCCTGTGATTCCAACACTCGGGAAAGTGAGACTCCTTATATTCTTGGTACTCTTTGGGCTCAAGTCACTCTGTTGCTTTAGGCTCCTGAGTAGCTAGGACAGCTGAGTCACAGAACGTCACTCTGCCCAGTGACAAGATGTTACATTTTAGAGACTTCTGACAGAGTAGGAGCACCTGGTGTGGAGGCTTGCAGACCTGCAGCTCTGGGAAGCTGGAGAGAACCAAAGACTACACCTTCTGTAACCCTGGCGCCCTCAGCTTCAGGTACATTGTCCCCAGGAGTGTTAGCGCTGCTCTTCCTAGTCACGTCTTTGCTCTTGCCACTGTCCACTAAGGCTGTGAGGCAGGTGTTGAGTACTTAAACTAGCATCAGGACACAGGAGACAGTGGGGACCCAGGTCCCCAAAAAGATAAATGGAGTCAAGGGAGCTAACAGCACAGCTCAGTGGTGAAGACTAGCACTGCTCTTGAGAGGTCCTGAGTTTGGATCTCAGCACCCATGTTTAGCAACGCATAACCACCAGCCCTAGAGGATCCGACCCACCCTGGCCTCCATGGGAGACTGTACTTATGTGCAAACACCCAGACACTCGCGCACACACACACACACAGACACACGCATACGCATATACACGCACATACGTAAAGACAGATAAAAATCAATTTCAAAAAATGAAGTCTAGAGGTGTAGCAAGAGATGTTTTAAAATGACTTTTTTTTTGTTTTGAGAAATTACAGAAGTATTGATGAGCTGTGTTGATGAGAAATTACAGAAGTATTGATGAGCTGTGTTGATGAGAACGATGCTAGAACTCATGACGCACTCAGTTTCTGATGCCAGCAGAAAAGCACACAAAGATTAGAGCGCAGATCTCTCCAGAGAACAGAGAGTTAGGGATCAGGGTCGCTTTTACTGGAGGCCGTGTGAGCAGTAGTGACGCCGCTCTGCATGTTGTTGACAACATCCAGAGTCCCAAAGGCAGGGGGCCCAGCTGTCCCACGGTTGGTGAGGGCAGAGTTTGTATGTGCTAACACCGGAAAGATTTATATAATAACCATCTAATTTATGTTCAAAATACTGTGCTACTTGTATATTTTTAAACAACAGGGCCAAAATAGTTAAAAATCACATGAGTACTGAATTTGAATATTAGAATTATTCCTTCAGGAAGAATTTACTGGGACTATAAGTGTAGGAATGTAAATAATTGGTAAATATACACTATAATAGCAGGTTTGGCGTACAGCTCAGGAGAAATATCTACCTAACATGTTTGAAACTCTGGGTTCCATCTGTAGCACTGCATAAAAACAAGGTGTGGTGGTACACACCTGTGATACCAGTCCTTGGGACAGAGGCAGAAAGATGAGAAATCCAAGATTATCCTTGGCTTTTAGGACACTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTATCTGTGTGTGTGTGTCTGTGTGTGTGTGTCTGTGTGTCTGTGTGTCTTTCTGTCTGTCTGTCTGTATAAGAGATTTTTAACTACTTTCCATCGGTCTTTGTTTCAG
Seq C2 exon
GTCCAGAGTGTTAACTCCTGTCATAGTTGTGCTTGTGGAAATTCTAATTCCTGGGACAAAGCAGATGATGATGACGTCAGACTTGTTAACATTCCTGTGACCACTCCTGAGAACTTGTACTTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056332:ENSRNOT00000089370:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(38.1=100)
A:
NA
C2:
PF102654=DUF2217=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGAGCTGTTCCAGTAGCA
R:
ATCAAGTACAAGTTCTCAGGAGTGG
Band lengths:
262-2079
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]