BtaINT0060339 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010653 | FAM73B
Description
Bos taurus family with sequence similarity 73, member B (FAM73B), mRNA. [Source:RefSeq mRNA;Acc:NM_001076053]
Coordinates
chr11:99549576-99550697:+
Coord C1 exon
chr11:99549576-99549629
Coord A exon
chr11:99549630-99550580
Coord C2 exon
chr11:99550581-99550697
Length
951 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CACGCCCGCCCCCCCAACAGGTG
3' ss Score
10.28
Exon sequences
Seq C1 exon
GCCCTGGCCACTGCCTGCTGGTCGGTCCTGAAAGCCAAGAGGAGGCTGCTGATG
Seq A exon
GTGAGTGAGCTGATGGTGAGGGGCCTCTTGAGAGCAGCTACGCAGGGGCTGGTGGGCCTTGGGTGTGGAGCATGGCTCAGGTGACCCTCCCTTTGGTGTGTGCTAGACCCGGGTCTGGGGGTGGGACAGGGTAGGGTGGGCTGCAGCTTTTGGCCTTTGTCACAGCACGGGTCACCCATCCTGCCGTGACCTCTCCCTTGACCGGAAGGGCCTCAAAGGCCCACAGAGATCTGCTTTGTCTTCCTACCCAGGGCCCAGCACAGAGCAGGCGGTCGGGAGGTGATGAGGGGGAATCAGAAGCGAGGAGAGGGCCTCTTTGGAGGGAGGCAGGGCCCGCGAGGTGCTGCTGGCGTCAGGGTCGGGGCAGGGCACCCTGGAGCAGGCTGAGCCCCCCTCCCACCCCAAGGGCCGCGTTATCTGCGCTCCCAGGTGGCGACCAGCCGCCTATCTGGGCTGCCACCCACTGTTCCCCCCCTGCCAGCCCAGCTCTGCCGCCCAGCTGATACCAGCTGCCACCGCCACGTGCCCTGGGCACTTCCTGCACTGAGCCTACCCCGGGCCCCTCCTCCGGCAGCCCTCCCCACCACCCTGAGGTGGCCCCTATGCTGCGGAGGCAAAAACCAGGGCTCTGAAAGCCCCGGTTTTGGGGGCACTTCCCTGGCAGTCCAGTGATTAGGACTTGATGCTTTCACTGCTGGGTCTGGGTTCCATCCTTGGTCAGGGAACTAAGATCCTGCAAGCTGTGTAGTGCTGCTAAATTTAAAATAAAAAAATTTTTTTAATTACAAAAGAAAGCCCCAGTCACTCACCCAACATCACCCAGCAAGGACATGAATGAGCCGGACATGCCTCTGAAGCCCCAGCTCTTAATATGACCCCAGGGCCTGGCTGCCTCTCCCTGCCCGGGTCCCAGCCCTTAGCCTTGCTGCCCCACGCCCGCCCCCCCAACAG
Seq C2 exon
GTGCCTGATGGCTTCATCTCCCATTTCTACTCCGTATCGGAGCACGTTAGCCCTGTCCTAGCCTTTGGCTTCCTTGGACCCAAGCCTCAGCTCTCTGAAGTCTGTGCTTTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010653:ENSBTAT00000014090:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(3.2=100)
A:
NA
C2:
PF102654=DUF2217=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development