RnoINT0092525 @ rn6
Intron Retention
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8948629-8951189:+
Coord C1 exon
chr3:8948629-8948682
Coord A exon
chr3:8948683-8949542
Coord C2 exon
chr3:8949543-8951189
Length
860 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CACCAATCTCCTACCCCCAGCAC
3' ss Score
6.16
Exon sequences
Seq C1 exon
GCCCTGGCCACCGCGTGCTGGTCTGTCCTGAAAGCCAAGAGGAGGCTTCTGATG
Seq A exon
GTGAGTGAGTGGCGAGGCTTCTTAGGACTGAGTCGCCAGAACTCCCTTAGCCATTTGGACTGAATGGGAGAGGGGCTAGGTGCAGCAAAGCATCAAGGTCCCCATATCCCACACTGCACCCCACTTGGCCAGGTGTCCCAGGGATCCTCAGGGAGGAGCAACCATCATGTCCCAGGACTCAGCAGAGGATGCACACCCTGGGAGAGGGGGAAGGAGGGCAGTGGCCACAGCAGTCAGGTAGCAGGCAGAGCTCTTCTCCTTCCCAGTAGGCCACTGGTACCTGCACCATGGATGGAGTAGCTGGCAGCCATTACTCCCTATGGCTGCCAGGCTCGACTGCTATGACCAGTTGGCTCTGCCCATAAGGCCTGCGAGGGGCAGCTCTCAGAGCAGTCTTCTAGCCCTTTCTGTAGAAGTGAGAGATCAGGGCTGTACAAGCCCACCCCTTGCTCTAGCCAGGACTTAGTGACCTTTGGGTAAGCCCTGCTCCCCAGCCCAGCCTGCTCCTCAGCCCTGCCCTCCCCACAGGTGCCTGATGGCTTCATCTCTCATTTCTACTCCGTATCGGAGCATGTTAGCCCTGTGCTGGCCTTTGGCTTCCTCGGACCCAAGCCCCAGCTCTCAGAAGTCTGTGCTTTCTTCAAGGTATATGGCCAGCACTCCTGCTTTCCTGCTACTACAGACACCAGAAGAGGGGTGGGGGCCTGGGCTGTTCTAGGTGAACCCTAGAGGAGGAGCCCCAGGAAGGCAGTTGCCTAAGGCTGGGAGAATGGGCTGGGGCTTGGTCACTGAGAAAGAGACTTTGTAGAATGTAGAAAATGTCCCAGGACCCAGTTCCAACACCAATCTCCTACCCCCAG
Seq C2 exon
CACCAGATTGTGCAATACCTGAGGGACATGTTCGACCTGGACAACGTGCGCTACACTTCTGTGCCAGCCCTAGCAGAAGACATCCTACAGTTGTCCCGGCGCCGCAGCGAGATTCTGTTGGGCTACCTGGGGGCACCAGTGGCTAGTAGCACCGGGCTGAATGGGCCACTGCCTCGAGAGAATGGGCCCCTGGATGAGCTGCAATAGTAGGGTGCGGGCTGGAGGAGAGAGGTGGCTGGGCCTCAGTCACAAGGGTGATTGCTGGGAGAGAGAAAGCTGCCCCTCCCTTCCTTTGGAGTGGCATCCAAGGGCCAGGGTGGCCAAGGGCCATTGCCCCTGAGCTTGCTCCACTTCCTCATCTGGGAATCCCAACACCCAGAGGACAGATTTCCATGAAGAGGAACCACTAGGAGCACTGGATAGCAGCTGCCCTTGGGGTTCCCTGAGCAGTAGAGGCAGGCCAGAGTCAGCAGCAGGGTCTGACCAAGGGCAAGCAGCAAGACAGAAAGGTGGTGGAGAATGGCTTTGAGCATGGACCACAGAGCCCTCATCTCCTCTGCCGCTGGCGGAGGGCAAGGAGGTGATAGGTAAGGGATAGAGCGCACAGGGCTATGTGGTGACCGGCACAGGGTTCTGCAATAGGAGCCATGTATAGCTACACAATTCCCAGCACCTGGGCTTCCGGCCAGGATGAAAGCCACATCTGGGCCATCCAGAGCGGGGCTCGCCCCATGTGTGCTCATGTCTGAGCAGGGACTCGTCCTTCACAAACCCAGGACGCTGTCCTCATATTCCCACGCCCTGCCAAAGACTCAAGTTTCCCCACCTCTGCCACCACCAAAGAGGGAGGAGGAGGCAGGGCTGGCCCTTCCCATGCCCTGGTGAGCCTGAAGCTCCTTCCTGGGCAGTGCTAGACTCCAGCTGAGGACTCCAGCCCGAGCTCACACAGGCCCATCTCCTGTGTTGCCATCTGCTGCTCCAAAGTGAGGACCTAGGAACCATGGCAGGGTGGGCAGAGGTCACACAGCAGGGCAGTTCCTCCCCATCACCCCACCCCACCCCACCCCCGACAAGCTGGACTCAGCACTTTGCCTTCAACTCCATGCACATGTGTTTTGGGGCAGCTGCCACCCAGGGTCCTGCAGCAGCCCTTGGCATTTGTCACGGAGGCTGCAGGGGTTCTGGCGGCCTTCCTTTTGCCTGAGCTGGGAAGCTTTTATTTATTGCCTTAATACTTTATTTGGCTGTTCCGTCCCTCCCAGTTGTGGCATGCAGGAGAAAAGACTCCTGGTCTGCAGTGGAGCACTGGCTCCTGGAACAAAGTTCCTCTCCCTGGAAGGGACAAGGGCTCCCTGGGGTCAGCAGGATGCACTGAAGAGAGGGTAGCCATGGCTCTGGGTCCTCTCTGAGGCCTGCGCTCAAAAGGGAGCAGCCCTCACGCACTGTCCTCACATTCCATTCTTTTGCACTTACCTTGAGCTGTGAATGTAACCTTGGGCCAAGGCCCACTCTGATTTGCTCCTGAACCATACAGCTGTGGCATTTTTATTTTGTCCTGTTTGTGTGTCCATGCCCCACCCTCTACACTCAACCAGCAATAGAGTGTGAGAGCAAGGCCTGTGAATCAGATAAAGGATCGAAGTGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513:ENSRNOT00000065300:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.221
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(3.7=100),PF102654=DUF2217=PU(0.1=0.0)
A:
NA
C2:
PF102654=DUF2217=PD(0.2=1.4),PF102654=DUF2217=PD(95.5=60.9)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCTGGTCTGTCCTGAAAG
R:
GATGCCACTCCAAAGGAAGGG
Band lengths:
346-1206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]