BtaINT0060340 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010653 | FAM73B
Description
Bos taurus family with sequence similarity 73, member B (FAM73B), mRNA. [Source:RefSeq mRNA;Acc:NM_001076053]
Coordinates
chr11:99550581-99552782:+
Coord C1 exon
chr11:99550581-99550697
Coord A exon
chr11:99550698-99550966
Coord C2 exon
chr11:99550967-99552782
Length
269 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
ATGCCAGCCATGTCCCCCAGCAC
3' ss Score
2.29
Exon sequences
Seq C1 exon
GTGCCTGATGGCTTCATCTCCCATTTCTACTCCGTATCGGAGCACGTTAGCCCTGTCCTAGCCTTTGGCTTCCTTGGACCCAAGCCTCAGCTCTCTGAAGTCTGTGCTTTCTTTAAG
Seq A exon
GTAAACAGGGAACTTGGCGTCTGCAGCTGCCTGCCTGGCCCTGTGTCTGGAGAAGGGTCTGGGCGGGGTGCCTGCCCCTTCCACTGGGGACCTGGCTCTGGGTGGGTCCACAGGAAGCCCCAGGAGGGCAGGAACGGGGGACAGAAGGGGCTGAGTTGGGGTCCCCCTGGGGCGGGGGGTCAGGGGAGCGGCTTTGGGTGGTCTGGAGAACCCCAGCTTGGTGGGGGGCAGGGGCCCTGGCCCAGCCTGATGCCAGCCATGTCCCCCAG
Seq C2 exon
CACCAGATTGTGCAGTACCTGACCGACATGTTCGACCTGGACAACGTGCGCTACACATCCGTGCCGGCGCTGGCTGAGGACATCCTCCAGCTGTCCCGGCGCCGCAGCGAGATCCTGCTCGGCTACCTGGGGGTGCCAGCGGCCAGCAGCATTGGCCTCAACGGCGTGCTGCCCCGGGAGAACGGGCCCCCAGAGGCACTGCAGTAGTGGCTGCTATGGGCCCAGGATGGTGGCTGCCTGGGCTGCCTTCACGTGGGGGACGCCAGAGAGAGGCCTTTGGGTTGGCGTGGGAGGCCCGGGTGTCTGGCCATCAGCAGTGGCATAGCCCAGGCCGTGGTGGCCAAGGGCACTTACTTGCCCCTGACCTTGCCTCCATCATCTGGGAATCCCCAGGGCCCGGAGGTGGAGGGCAGACTTCCTTGGAGATGGAGGGAGCCCCGAGGGGTCCACCTGACCCGCCCTCAGTTGTGCCTGGGGAAGCAGAGGCTGGACTGGTGGCCAGGGGGCCAGAGAGGAAGAATCAGGCGGACATGGGATGCCCAGGGTGTGGGTCCCCAACACCTCCCGCCTCCCAGCGGGGCTCGGAGGGTGGAGATGGAAGAGAGGGTGGCAGGGCTCTGTGGTGAAGGAGCCCGGGCCGGCCAGTGTCAGGTCCAGGCATGGACCTGGCCAGTGCTCACGGCCTGCCGCCACCCGAAAGAACAGCTCCAGGGGTGAAGGCTGCGGCTGGGGGCACCTTGGTGGGCATCAGGCCTGGGCCATCCCGAGGTGGGCCCGCTTAGGCTCACGTCTGGACGGGGATCAGGCCCTTGAGAAACCCAAGCACTGGAGCAGGACGCTGTCCTCTGCCCTTCCCTGGCCCTCCCGAAGACTGTTGTTTCTCCTCCCACCTCTGCCACCACCAAAGATGGAGGAGGTGGGGCTGGTCGCCCTCCGCCCTGCCCTCTGTGAGCCCGGGACTCTCTGGCTGGTGCTAGGCGCTGGGCTGGAGGCTCTGACCGGGGTTATTTCGGTCCCTGAGAGTGAGGGGCTGAGGAGCCGTGGGGCAGGGGATGGTCAGAGGATGCAGGCGGCTGGACCGGCATCAGGACAGGAAACTCACCGGGCCCTCAGCCTTCAACTTGACGCACAAACCGAGGAGCAGTGCAAAGCCCGCCGCCAAAGGCTGCGGGCATCAGTCCCCACGTCGCCGGGTTTCTGTCTGCCCGCAGACTCGTTCCCCTTGTGCTGTTTGCACCTGAGGAAACAGGTGTTTCATTTATTGCCTTAACACTTTATTTTGAGGTCCGCCCCTTTCCAGGCAGGGTTGGAGGGCAGGGGGATGCCTCCAAGAGACACAGACTCCTGTTTTTCCACACTCTGGAGTTGGGACTGGCTCCTTAGTCCCGGGGGCGCCCTCCTTTGAATGGCAAAGGGGTCCCCGGGGTGGGATGGGAGGCAGGGCAGGAGAGGACCCATCTTCTGTGAGCCTACTCCCGCCCCCCAGACTGCAGGGACCACTGTGCACTAACTATGCTTCTGGCTCCAAACCCACGTGTCTGAGGTCTTAGCTGCCTCCCTCTGGGTGGGAAGGACGGGGAGGCCCCTCCATGCTAACATTCCGCTCATTTGCACTTCCCCCGCCCGCGCTGTGAATGTGTTGGGCCTAGGCCCTGGCTGCTCTGATTTGCTCCCCGGTCACCCAGAAGTGGCATTTTCACCTTGTCTGTGTTTACATGTCCATGCACTGCCTCTGGCACTTGATTTGTTGCAGCTTCCCACTTTTGTACGGTAGGGCCTGTGCACATCGACTCGAGTCAAATAAATGATTTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010653:ENSBTAT00000014090:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.088
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.1=100)
A:
NA
C2:
PF102654=DUF2217=PD(7.8=60.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCCTGTCCTAGCCTTTGG
R:
GGCCCATAGCAGCCACTACT
Band lengths:
292-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development