MmuINT0062067 @ mm9
Intron Retention
Gene
ENSMUSG00000026858 | Fam73b
Description
family with sequence similarity 73, member B [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30239110-30241039:+
Coord C1 exon
chr2:30239110-30239226
Coord A exon
chr2:30239227-30239448
Coord C2 exon
chr2:30239449-30241039
Length
222 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
CACCAGTCTCCTACCCCTAGCAC
3' ss Score
5.3
Exon sequences
Seq C1 exon
GTGCCTGATGGCTTCATCTCCCATTTCTACTCCGTATCGGAGCATGTTAGCCCTGTGTTGGCCTTTGGCTTCCTCGGACCCAAGCCCCAGCTCTCGGAAGTCTGTGCTTTCTTCAAG
Seq A exon
GTACATGACAACACTCCTGCTTTCCTGCTACTGCAGACACCCCTCAGTGCCAGAAGAGGGGTGGGACCCGGGCTGCTCTAGGTGACCACTATAGGATGAGCCCAGGAAGGCAGTTGCTTAAGGCTGGGAGAGTGGGCTGGGGCTTGGTCATTGAGAAAGGGACTTTGTAGAATGTAGAAAATGTCTCAGGACCCAAACCCAACACCAGTCTCCTACCCCTAG
Seq C2 exon
CACCAGATTGTACAATACCTGAGGGACATGTTCGACCTGGACAACGTGCGCTACACATCTGTGCCAGCCCTAGCAGAAGACATCCTACAGCTGTCCCGGCGGCGCAGCGAGATTCTATTGGGCTACCTGGGGGCACCTGTGGCTAGTAGCATCGGGCTGAATGGGCCACTGCCTCGAGAAAATGGGCCCCTGGAAGAGCTGCAGTAACAGGGGATGGGCTGGAGGGGAGAGGTGGCTGTTTGGGCCTCAGATACAAGGTGATAGGAGAGAGAAAGCTGCCACTCCCTTCCTTTGGGTTGGTATCCAAGGGCCATGGTGGCCAAGGGCCATTGCCCCTAAGCTTGCTCCACTTCCTCACCTGGGAATTCCCAACACCCAGGGGACAAATTTCCATGGAGAGGAACCACTAGAAGCACTGATAGCAGCTGCCCTTGGGGTTCCCTGAGCAGCAGAGGCAGGCCAGAGTCAGCAGGGACTGGCCAGGGGCAGGTAGCAAGAGAGAAAGGTGTGGGAGCAAATGGCTCTTGAGTATGGACCACAGAACCCCAGTCCCCCCCTGCTGCTGAGGGAGGGCAAGGGATAGTTGAGGGATAGAACATACAGGGCTAGGTGGTGACAGTCACAGGGTCCTGCAATTAGCAGCCACCAATAGCTACATTAAGTCCCAGCACCTAGGCTTCTGGCCAGTATGGAAAGCCATGTCTGGGCCATCCAGAGGTGGGCTTGCCCCATGTGTGCTCACATCTGAGCAGGTACTCACCCTTCACAAACCCTTGGCGCTGTTCTCCACATTCCCACACCCTGCCAAAGATTGTTTTTATCCCCTCTGTCACCAAAGATGGAGGAGGCAGGACTGGCCGCTTCCTGCTCTCTGGTGAGCCAGGAGCTCCTGGGCAGTGCTGGGCCCCAGTCAGAGCTCACAGTGGCCCATCTACTGCTCCAAAAGTGAGCACGGAACCATGGCAGGGTGGGCATGGGCTGCACAGCGGGCAGCTCCCCCTTCCCCTTTCTGACAGGAAGCTGGACTCAGCACTTTGCCTTCAACTCCATGCACACGTGCTTTGGGGCTGCCACCACCCACGTCCTGCAGACAGTTGGCATTTGTCACGGCAGCTGCAGTAGTCCTGGCAGCCCTCCTTTTGCCTGAGCTGGGAAGTTTTTATTTATTGCCTTAATACTTTATTTGGCTGTTCCATCCCTTCCAGGTTGTGACACCAGGAGAAAAGACTCCTGGTCTGGAGTTGAGCACTGGCTCCTGGAACCAAGTTCCTCTCCCTGGAAGGGAAAAGGGTTCCCCAGGGTCAGCAGGATGCAGTAAAGAGAGGGCAGCCATGGCTCTGGGTCCTCTCTGAGGCTTGTGCTCAGAAGGGAGCAGCCCTCATGCACTGTCTTGACATTCCATTCATTTGCACTTACCCTGAGCTGTGAATGTGACCCTGGGCTAAGGCCTGCTCTGCTCTGCCCCTGACCCATACAGTGTGGTATTTTCATTTTTGTCCTGTTCATGTGTCTATGCCCCACCCTCTAGCACTCAACCAGCAGTGGTAGAGTGTGTGTAAGGCCTGTGAGTCAGATAAAGGACCGAAGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858-Fam73b:NM_175392:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.1=100)
A:
NA
C2:
PF102654=DUF2217=PD(1.4=1.7),PF102654=DUF2217=PD(93.3=72.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATCGGAGCATGTTAGCCC
R:
ATCCCCTGTTACTGCAGCTCT
Band lengths:
300-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: