GgaINT1012984 @ galGal4
Intron Retention
Gene
ENSGALG00000004490 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:HGNC:23621]
Coordinates
chr17:5471201-5472221:+
Coord C1 exon
chr17:5471201-5471317
Coord A exon
chr17:5471318-5472020
Coord C2 exon
chr17:5472021-5472221
Length
703 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ACTTCCTTTTCTCTTTGCAGCAC
3' ss Score
12.11
Exon sequences
Seq C1 exon
GTACCAGATGGCTTTATCTCTCACTTCTACTCCGTATCGGAGCACGTCAGTCCTGTTCTAGCCTTTGGTTTTCTGGGGCCCAAACAGCAGCTTGCTGAAGTCTGCAGTTTCTTCAAG
Seq A exon
GTAAGATGGCTTTCCTCTACCTGCTCTGTGTGAGAGTCCTGCAGTCTTCTAGCTTAAAGCCACATGAGTGCTTTTGTTGGCTGGCTTTGACTGATGTGGTACGAGAAATCTGATTATATACAAGAGTCTTCTAGACAATCACTGGTTCTTGAGAAGCAGATCTCTGAATTCAGATTGATGAGAATTCCCAATGTGATTGACCATGACTGATAGCAATAAAATGTGTGGTGAAATCAATTTATGTCATCAGTACTGGAAAAGATTAAAGGTGCATATGTTGAAAGAATATGTTGTTTAAGTGCTTAAGTGCTTAAAGAATAAGTTGTTTAAGATGATGAAAGTTGCATACTTGGTCTTAAAGTCTGTGGATAAAATCATGAAGTGCTGATGTTGCTTCCATTAAATGCTGCTATGGTTATTTCTGTGGACATTGGCATTTCTTTAATGACTTCAGAATCATAGAATGGCCTGGGTTGAAAAAGACTACAACGATCATCTAGTTTCAACCCCTGTGCTACGTGCAGGGACTTTAGGAGCTCTGCTGTCCTGTTTCAGAGGCGTGAGGGGAGTTGGTCACAAGTGATATCCAGCCTGAAGCAGATCTGCTTGGATAGCAGGCATAGAAAATTCCTTATGGGATAGGTGGTATTGGAAGGTGTGAGAGAAGGTCTCCTTACTGTAAAACTTCCTTTTCTCTTTGCAG
Seq C2 exon
CACCAGATAGTACAATATTTGAAGGACATGTTTGATCTGGACAATGTGAGATACACAACAGTGCAGCTGCTGGCAGAAGACATCTTGCAGCTGTCACGGAGGCGCAGTGAGATCCTCTTGGGATATCTGGGCACAGAGAGCTCCCCTGAGATGAATGGCACACTTCCCATTGAAAACGAGCTGCTGAAGGAGCTCATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004490:ENSGALT00000007150:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.1=100)
A:
NA
C2:
PF102654=DUF2217=PD(7.8=62.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGATGGCTTTATCTCTCACT
R:
TCCTTCAGCAGCTCGTTTTCA
Band lengths:
306-1009
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]