MmuINT0062067 @ mm10
Intron Retention
Gene
ENSMUSG00000026858 | Miga2
Description
mitoguardin 2 [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30383590-30385521:+
Coord C1 exon
chr2:30383590-30383706
Coord A exon
chr2:30383707-30383928
Coord C2 exon
chr2:30383929-30385521
Length
222 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
CACCAGTCTCCTACCCCTAGCAC
3' ss Score
5.3
Exon sequences
Seq C1 exon
GTGCCTGATGGCTTCATCTCCCATTTCTACTCCGTATCGGAGCATGTTAGCCCTGTGTTGGCCTTTGGCTTCCTCGGACCCAAGCCCCAGCTCTCGGAAGTCTGTGCTTTCTTCAAG
Seq A exon
GTACATGACAACACTCCTGCTTTCCTGCTACTGCAGACACCCCTCAGTGCCAGAAGAGGGGTGGGACCCGGGCTGCTCTAGGTGACCACTATAGGATGAGCCCAGGAAGGCAGTTGCTTAAGGCTGGGAGAGTGGGCTGGGGCTTGGTCATTGAGAAAGGGACTTTGTAGAATGTAGAAAATGTCTCAGGACCCAAACCCAACACCAGTCTCCTACCCCTAG
Seq C2 exon
CACCAGATTGTACAATACCTGAGGGACATGTTCGACCTGGACAACGTGCGCTACACATCTGTGCCAGCCCTAGCAGAAGACATCCTACAGCTGTCCCGGCGGCGCAGCGAGATTCTATTGGGCTACCTGGGGGCACCTGTGGCTAGTAGCATCGGGCTGAATGGGCCACTGCCTCGAGAAAATGGGCCCCTGGAAGAGCTGCAGTAACAGGGGATGGGCTGGAGGGGAGAGGTGGCTGTTTGGGCCTCAGATACAAGGTGATAGGAGAGAGAAAGCTGCCACTCCCTTCCTTTGGGTTGGTATCCAAGGGCCATGGTGGCCAAGGGCCATTGCCCCTAAGCTTGCTCCACTTCCTCACCTGGGAATTCCCAACACCCAGGGGACAAATTTCCATGGAGAGGAACCACTAGAAGCACTGATAGCAGCTGCCCTTGGGGTTCCCTGAGCAGCAGAGGCAGGCCAGAGTCAGCAGGGACTGGCCAGGGGCAGGTAGCAAGAGAGAAAGGTGTGGGAGCAAATGGCTCTTGAGTATGGACCACAGAACCCCAGTCCCCCCCTGCTGCTGAGGGAGGGCAAGGGATAGTTGAGGGATAGAACATACAGGGCTAGGTGGTGACAGTCACAGGGTCCTGCAATTAGCAGCCACCAATAGCTACATTAAGTCCCAGCACCTAGGCTTCTGGCCAGTATGGAAAGCCATGTCTGGGCCATCCAGAGGTGGGCTTGCCCCATGTGTGCTCACATCTGAGCAGGTACTCACCCTTCACAAACCCTTGGCGCTGTTCTCCACATTCCCACACCCTGCCAAAGATTGTTTTTATCCCCTCTGTCACCAAAGATGGAGGAGGCAGGACTGGCCGCTTCCTGCTCTCTGGTGAGCCAGGAGCTCCTGGGCAGTGCTGGGCCCCAGTCAGAGCTCACAGTGGCCCATCTACTGCTCCAAAAGTGAGCACGGAACCATGGCAGGGTGGGCATGGGCTGCACAGCGGGCAGCTCCCCCTTCCCCTTTCTGACAGGAAGCTGGACTCAGCACTTTGCCTTCAACTCCATGCACACGTGCTTTGGGGCTGCCACCACCCACGTCCTGCAGACAGTTGGCATTTGTCACGGCAGCTGCAGTAGTCCTGGCAGCCCTCCTTTTGCCTGAGCTGGGAAGTTTTTATTTATTGCCTTAATACTTTATTTGGCTGTTCCATCCCTTCCAGGTTGTGACACCAGGAGAAAAGACTCCTGGTCTGGAGTTGAGCACTGGCTCCTGGAACCAAGTTCCTCTCCCTGGAAGGGAAAAGGGTTCCCCAGGGTCAGCAGGATGCAGTAAAGAGAGGGCAGCCATGGCTCTGGGTCCTCTCTGAGGCTTGTGCTCAGAAGGGAGCAGCCCTCATGCACTGTCTTGACATTCCATTCATTTGCACTTACCCTGAGCTGTGAATGTGACCCTGGGCTAAGGCCTGCTCTGCTCTGCCCCTGACCCATACAGTGTGGTATTTTCATTTTTGTCCTGTTCATGTGTCTATGCCCCACCCTCTAGCACTCAACCAGCAGTGGTAGAGTGTGTGTAAGGCCTGTGAGTCAGATAAAGGACCGAAGCGACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858:ENSMUST00000077977:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.1=100)
A:
NA
C2:
PF102654=DUF2217=PD(1.4=1.7),PF102654=DUF2217=PD(93.3=72.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATCGGAGCATGTTAGCCC
R:
ATCCCCTGTTACTGCAGCTCT
Band lengths:
300-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types