GgaINT1012983 @ galGal4
Intron Retention
Gene
ENSGALG00000004490 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:HGNC:23621]
Coordinates
chr17:5470201-5471317:+
Coord C1 exon
chr17:5470201-5470254
Coord A exon
chr17:5470255-5471200
Coord C2 exon
chr17:5471201-5471317
Length
946 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TTTTCCCTTCCTTGTGGCAGGTA
3' ss Score
10.09
Exon sequences
Seq C1 exon
GCCCTAGCAACTGCCTGCTGGTCTGTTCTGAAAGCAAAAAGGAGGCTTCTAATG
Seq A exon
GTAAGCAAAATTAGTGAACAGAGAAAGAATCAAATGCATTTGAAGCTGAAAAGATATCATGAAGATCGTGGTGAAATGCAAAACCTTTGTGGTGTAAGAATGAACTGAACTGCATTCTCTCTGCTTTAGAGTGCTGGGGTCCTGCTGTCATTTATCTGTACCAGTGCAACATCAGTGCTTTACAGTTGTGAGTTTATTCTCACCTTTTCTTAATAAGAGGATTCAGAGGATAATGTTCTCCATCTGGTATTCCCTATCCTTGCTCACAGTCCCATAGGAATGGTCTCAGTTGCTCTCTGAACTGCAGTTTGCCTTTTGGTGGGCTCACATGCTCTCCTGCCTCCCAGTGCTGACCACTGGCTAGCTTGTACCTTGTGCATGTCCCTTAAACCTGTTCCTTCTGTAAGTACTGCAGCAGATGAGTGTGAGAACCTGGAGAACAGGAAGCTGCAACTTCACAATCACACTTCTACCACAGGGACTGTGGCCTCTTGCAAGTGTTCAGCTTCTCTTTCACAGCTAGCTGGTATGACTGGGTTTGCCTTGTGAGATGATGCAAAGAGTAATGAGTACACTGGAAGCTGTATTGCCATGCAGAATCTCTGTCTTAGGTATCTGGATTTTTTTGTGCTCGTTTCTGGCTTAGTCTGGAGGTTACAAGTAGAGTTGGTAAGGACTGCTTGATGGTTGCCTTCCATTTTCTTCTATCTATTCTTCTCCTGAAAGAGTAGCTTAGAAACATAGAGATAGAAAGCTCAAGTCATCCTTCAAGAAATGTGACGGGTAACTGTAATTCTGCAGGAAGAGGTATTCTTAAGCAGCTCTTCAGTTACTGAAGCACAGTTCTTCCTGGAATGGTAGTTCCAACTTTGGTAGTTGATATGGAACAAGCTGCTAATTCTGTCTGAGAACTGAGACCTACCAGTTTTTCCCTTCCTTGTGGCAG
Seq C2 exon
GTACCAGATGGCTTTATCTCTCACTTCTACTCCGTATCGGAGCACGTCAGTCCTGTTCTAGCCTTTGGTTTTCTGGGGCCCAAACAGCAGCTTGCTGAAGTCTGCAGTTTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004490:ENSGALT00000007150:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(3.2=100)
A:
NA
C2:
PF102654=DUF2217=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]