GgaEX0006052 @ galGal4
Exon Skipping
Gene
ENSGALG00000004490 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:HGNC:23621]
Coordinates
chr17:5468377-5472221:+
Coord C1 exon
chr17:5468377-5468463
Coord A exon
chr17:5470201-5470254
Coord C2 exon
chr17:5472021-5472221
Length
54 bp
Sequences
Splice sites
3' ss Seq
GGTCTCTTTGTTAATTGTAGGCC
3' ss Score
7.49
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GAGCTGCTGGAGGATGAAAGCAATCAACTGTTTTTTGGAGAGGTTGGGAAGCAAATGGTGATAGGATTGATGACAAAAGCTGAAAAG
Seq A exon
GCCCTAGCAACTGCCTGCTGGTCTGTTCTGAAAGCAAAAAGGAGGCTTCTAATG
Seq C2 exon
CACCAGATAGTACAATATTTGAAGGACATGTTTGATCTGGACAATGTGAGATACACAACAGTGCAGCTGCTGGCAGAAGACATCTTGCAGCTGTCACGGAGGCGCAGTGAGATCCTCTTGGGATATCTGGGCACAGAGAGCTCCCCTGAGATGAATGGCACACTTCCCATTGAAAACGAGCTGCTGAAGGAGCTCATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004490_MULTIEX2-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(5.2=100)
A:
PF102654=DUF2217=FE(3.2=100)
C2:
PF102654=DUF2217=PD(7.8=62.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTGGGAAGCAAATGGTGA
R:
AAGATGTCTTCTGCCAGCAGC
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]