HsaEX0024627 @ hg38
Exon Skipping
Gene
ENSG00000148343 | MIGA2
Description
mitoguardin 2 [Source:HGNC Symbol;Acc:HGNC:23621]
Coordinates
chr9:129068019-129069965:+
Coord C1 exon
chr9:129068019-129068332
Coord A exon
chr9:129069076-129069129
Coord C2 exon
chr9:129069849-129069965
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACATCCTATTTTTGATGTAGGCC
3' ss Score
8
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GCCAAGGCAGAGGGAGGAATGGCCTCAGCTACACCCGTTGCACAGCAGAGCGGGAAAGACGTGTCCCCCCCACGTGTGCTCATGCCCTGGACCCCAGCTTCAGTCTCCCCATCTGGAAAGTGGCCCCGAGGCTCCGGCAGTGCCCCCATGCATGAGCCTCCCGGGGGCACCCTCTGTAGGTGGTATGCATGAGCTTCTTCGACATCGTGCTGGACTTCATCCTCATGGACGCCTTCGAGGACCTGGAGAACCCTCCGGCCTCGGTGCTCGCCGTCCTGCGGAACCGCTGGCTGTCAGACAGCTTCAAGGAGACG
Seq A exon
GCCTTGGCCACTGCTTGCTGGTCGGTCCTGAAAGCCAAGAGGAGGCTGCTGATG
Seq C2 exon
GTGCCTGATGGCTTCATCTCCCATTTCTACTCCGTATCGGAGCATGTGAGCCCTGTCCTAGCCTTCGGCTTCCTTGGACCCAAGCCTCAGCTTGCTGAAGTCTGTGCTTTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148343-'49-89,'49-86,54-89
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.398 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(10.0=100)
A:
PF102654=DUF2217=FE(3.2=100)
C2:
PF102654=DUF2217=FE(7.1=100)
Main Skipping Isoform:
ENST00000358369fB2607
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAGGACCTGGAGAACCC
R:
TAGGACAGGGCTCACATGCTC
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development