MmuEX6100263 @ mm10
Exon Skipping
Gene
ENSMUSG00000026858 | Miga2
Description
mitoguardin 2 [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30381939-30383706:+
Coord C1 exon
chr2:30381939-30382073
Coord A exon
chr2:30382966-30383019
Coord C2 exon
chr2:30383590-30383706
Length
54 bp
Sequences
Splice sites
3' ss Seq
GGGTCTTGCCTGTGTTTTAGGCC
3' ss Score
8.9
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTGGCCTGCATGAGCTTCTTCGACATCGTGCTGGACTTCATCCTCATGGATGCCTTTGAGGACCTAGAGAACCCTCCGTCTTCGGTGCTTGCTGTCCTGAGGAACCGCTGGCTGTCTGACAGCTTCAAAGAAACA
Seq A exon
GCCCTAGCCACCGCGTGCTGGTCTGTCCTGAAAGCCAAGAGGAGGCTCCTGATG
Seq C2 exon
GTGCCTGATGGCTTCATCTCCCATTTCTACTCCGTATCGGAGCATGTTAGCCCTGTGTTGGCCTTTGGCTTCCTCGGACCCAAGCCCCAGCTCTCGGAAGTCTGTGCTTTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858-'26-32,'26-29,30-32=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.110 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(60.3=100)
A:
PF102654=DUF2217=FE(23.3=100),PF102654=DUF2217=PU(2.2=5.6)
C2:
PF102654=DUF2217=FE(7.1=100)
Main Skipping Isoform:
ENSMUST00000077977fB12865
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTAGAGAACCCTCCGTC
R:
CCAACACAGGGCTAACATGCT
Band lengths:
137-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types