BtaEX6046595 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010653 | FAM73B
Description
Bos taurus family with sequence similarity 73, member B (FAM73B), mRNA. [Source:RefSeq mRNA;Acc:NM_001076053]
Coordinates
chr11:99548672-99550697:+
Coord C1 exon
chr11:99548672-99548806
Coord A exon
chr11:99549576-99549629
Coord C2 exon
chr11:99550581-99550697
Length
54 bp
Sequences
Splice sites
3' ss Seq
GGGTGCCCTCTTTAATTTAGGCC
3' ss Score
7.63
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTGGTGTGCATGAGCTTCTTTGACATCGTGCTGGATTTTATCCTCATGGACGCCTTCGAGGACCTGGAGAACCCCCCGTCCTCGGTGCTCGCCGTCCTGAGGAACCGCTGGCTGTCAGACAGCTTCAAGGAGACG
Seq A exon
GCCCTGGCCACTGCCTGCTGGTCGGTCCTGAAAGCCAAGAGGAGGCTGCTGATG
Seq C2 exon
GTGCCTGATGGCTTCATCTCCCATTTCTACTCCGTATCGGAGCACGTTAGCCCTGTCCTAGCCTTTGGCTTCCTTGGACCCAAGCCTCAGCTCTCTGAAGTCTGTGCTTTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010653-'16-21,'16-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(8.2=100)
A:
PF102654=DUF2217=FE(3.2=100)
C2:
PF102654=DUF2217=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAGGACCTGGAGAACCC
R:
TAGGACAGGGCTAACGTGCTC
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]