RnoEX6016306 @ rn6
Exon Skipping
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8947470-8949327:+
Coord C1 exon
chr3:8947470-8947604
Coord A exon
chr3:8948629-8948682
Coord C2 exon
chr3:8949211-8949327
Length
54 bp
Sequences
Splice sites
3' ss Seq
GGGTCTTACCTGTGTTTTAGGCC
3' ss Score
9.35
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTGGCATGCATGAGCTTCTTCGACATCGTGTTGGACTTCATCCTCATGGATGCCTTTGAGGACCTAGAGAACCCTCCATCTTCGGTGCTTGCTGTCCTGCGGAACCGTTGGCTGTCTGATAGCTTCAAGGAAACA
Seq A exon
GCCCTGGCCACCGCGTGCTGGTCTGTCCTGAAAGCCAAGAGGAGGCTTCTGATG
Seq C2 exon
GTGCCTGATGGCTTCATCTCTCATTTCTACTCCGTATCGGAGCATGTTAGCCCTGTGCTGGCCTTTGGCTTCCTCGGACCCAAGCCCCAGCTCTCAGAAGTCTGTGCTTTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513-'29-30,'29-29,31-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(9.6=100)
A:
PF102654=DUF2217=FE(3.7=100),PF102654=DUF2217=PU(0.1=0.0)
C2:
PF102654=DUF2217=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGTTGGCTGTCTGATAGC
R:
ACAGACTTCTGAGAGCTGGGG
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]