GgaINT1012981 @ galGal4
Intron Retention
Gene
ENSGALG00000004490 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:HGNC:23621]
Coordinates
chr17:5469071-5469775:+
Coord C1 exon
chr17:5469071-5469169
Coord A exon
chr17:5469170-5469640
Coord C2 exon
chr17:5469641-5469775
Length
471 bp
Sequences
Splice sites
5' ss Seq
GGGGTTGGT
5' ss Score
0.32
3' ss Seq
ACTTCTCTGCTCTCTGACAGGTG
3' ss Score
11.51
Exon sequences
Seq C1 exon
AATCCCAAAGCTTTTCTGGAAAGCTATGAGGAGATGCTGCATTATGCACTGAAGCCAGAGACATGGCCGACCACACAGCAGGAGCTGGAGGGAAGAGGG
Seq A exon
GTTGGTAAAGACATTCTCTCTAGGAGTTGGAGAGTAAAGGATATGTAGGAACAAGCATGGAGTGAATGAATGGCTTCTGAAATACGATTACTTTGCAATTGTACGTTGTGGGGGAGGGCAGGGGGAAAACTGGCTGGCGGAGTGTTTAAGCTTCATAGCAGATATTGCTGTCAGCAATGTTAGCACTACTGTGTTTATAAAATAAAAATAATGGGGAAAAAACCACCACACCCTCTTTCTAGAGGGCACAAGCTGATGTGTGTAGCTCTAAGATTTGCTTGCCCTTTTGACTGGAGTTTTTCTGGGCTCAGGAATTGGAAGCCCCTTGGCCAGCCCCTGTCTGAGGTTTGGCCTGTGAACTGAATGAACACAGATTCTTGTACTGGTGGCAAACATTGTTTTGTTGTTTCAAAGTCCATCTCCTTTTTCTGTAAACCTGTTTCCTTTACAGACTTCTCTGCTCTCTGACAG
Seq C2 exon
GTGGTGTGCATGAGTTTCTTTGATATTGTGCTAGACTTTATCCTCATGGATGCTTTTGAGGATTTGGAGAATCCCCCCTCCTCTGTGCTGGCTGTGCTGCGCAACCGTTGGCTGTCGGATAGCTTCAAGGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004490:ENSGALT00000007150:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(5.9=100)
A:
NA
C2:
PF102654=DUF2217=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCAAAGCTTTTCTGGAAAG
R:
CTCCTTGAAGCTATCCGACAGC
Band lengths:
230-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]