RnoINT0092523 @ rn6
Intron Retention
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8947167-8947604:+
Coord C1 exon
chr3:8947167-8947265
Coord A exon
chr3:8947266-8947469
Coord C2 exon
chr3:8947470-8947604
Length
204 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
ATGCCCCCTCTTCTCTAAAGGTG
3' ss Score
8.67
Exon sequences
Seq C1 exon
AGTCCCAAGGGCTTCCTGGAGAGCTACGAGGAGATGTTGAACTACGCCCTGCGGCCTGAGACCTGGGCTACCACCCGGTTGGAGCTGGAGGGCAGAGGG
Seq A exon
GTGAGTCTGCTCGTGCTGGGCTCCTGGCTTCTTCAGAGCTCAGATGATGATGTCGGGAGCTTGCGCCCAGCTTTGCATCGGTGCTAAGCAGCTGAGATGGCGCATCACTGCGCTGAGCCTGGCTTCCAGCCATTTCCCCAGGTGTCGCACACAGGCCCCCATTGGCCTCGGCACGGTAGCTCTAATGCCCCCTCTTCTCTAAAG
Seq C2 exon
GTGGCATGCATGAGCTTCTTCGACATCGTGTTGGACTTCATCCTCATGGATGCCTTTGAGGACCTAGAGAACCCTCCATCTTCGGTGCTTGCTGTCCTGCGGAACCGTTGGCTGTCTGATAGCTTCAAGGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513:ENSRNOT00000065300:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.0=100)
A:
NA
C2:
PF102654=DUF2217=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCAAGGGCTTCCTGGAG
R:
CCTTGAAGCTATCAGACAGCCA
Band lengths:
228-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]