MmuINT0062064 @ mm9
Intron Retention
Gene
ENSMUSG00000026858 | Fam73b
Description
family with sequence similarity 73, member B [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30237158-30237593:+
Coord C1 exon
chr2:30237158-30237256
Coord A exon
chr2:30237257-30237458
Coord C2 exon
chr2:30237459-30237593
Length
202 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
GATGCCCCTCTTCCCCGAAGGTG
3' ss Score
8.39
Exon sequences
Seq C1 exon
AGTCCCAAAGGCTTCCTGGAGAGCTATGAGGAGATGCTGAGCTACGCCCTGCGGCCTGAGACCTGGGCTACCACCCGGCTGGAGCTGGAGGGCAGAGGG
Seq A exon
GTGAGTCTGCTGGTGCTGACCTCCTGGGACTCTTCAGGACCGAGGTCATTGTGCTGGGAGCTCGTGCCCAGCTCTGCATCAGCGCTAAGCAGCTGAGAGGGCTTGTCACTGCACTGAGCCTGGGTCCCAGCCGTTTCCCCATGTAGCGCACGGGCCCCCCTGGCCTCGGCACGGTAGCTCTAGATGCCCCTCTTCCCCGAAG
Seq C2 exon
GTGGCCTGCATGAGCTTCTTCGACATCGTGCTGGACTTCATCCTCATGGATGCCTTTGAGGACCTAGAGAACCCTCCGTCTTCGGTGCTTGCTGTCCTGAGGAACCGCTGGCTGTCTGACAGCTTCAAAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858-Fam73b:NM_175392:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(5.9=100)
A:
NA
C2:
PF102654=DUF2217=FE(60.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAAAGGCTTCCTGGAGAG
R:
TGTTTCTTTGAAGCTGTCAGACA
Band lengths:
232-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: