BtaINT0060649 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008140 | FAP
Description
Bos taurus fibroblast activation protein, alpha (FAP), mRNA. [Source:RefSeq mRNA;Acc:NM_001098001]
Coordinates
chr2:34352079-34358030:+
Coord C1 exon
chr2:34352079-34352126
Coord A exon
chr2:34352127-34357931
Coord C2 exon
chr2:34357932-34358030
Length
5805 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
AATGAACTTTTTTTTTTAAGAAA
3' ss Score
5.49
Exon sequences
Seq C1 exon
GCCCAGGCCTCCCCATTTCCACCCTTCATGATGGCCGCACCGACCAAG
Seq A exon
GTACTGTCTCCTACATGCTGTAGTCTTAAGAAATCCTGGACTCTTGTGACACTAGAGAAAGCAAGACAGCTTCCCCACACCAGCAAGGGGAACAGTGACATATAGCTTATTGCATAGCTTTTGATTATATTGATCAACCTATTCTTTGTCAAACCTGACCAGATGAAAGTTTATTATTTGCAGTAAGAACCTGGCATAAAGCAGATGAGTTATGTAAGACGAATTAATCCTGTCTTCGCCAATCACCCTTATAAAAACACAGAAGCTTAAAATTGGAAGGAAACTGAAGATTTTTAGTACACTCTCCCTCCCAAATAAGAAGGCCTTTTTTTTTTTTTTTTTTTTTTAACATCCCGAACTGGAGATAAGTTCTGGATATAACTCCAGTTCGAAGCAAAGGGTGACTATCATGCTAGCTTTTTTGTTTTAACAGCTACATCACACTGTTGCCACGTATGAAAGCCCTGAAATTTGGAGGCTCTTTCCATTTGCAACTGCTATCAAAGCAGATCTCCTCCATCCTGTATTCGTGATATTGGTTCAAAAATAGTTCACAGCTCAAAGATGACCATTTTTACTCTCGACGGAGATATACAAGTGTATAATTGCCCTGAGACTCTTCCTGCGGTTCTCTGTTACCTTTTGATTTACTATGAGACATTGTGGGGTTGAAGTTGATGGAATCTAAGGGCAAAAAGGGACTTCAGCACTCAAGCCTGTGATTGTCCTTGGACAGCTTTGGTGACAAGTCAGGAGACTGACTGCTTTGGAATTAGTTTGGCTGCCAGCTCAATGGCCTACGCATAGGTGAAAATAAGGCAATGAGGAAAATCAGAGTCCATTCAGGAGCTCAGGACAGGACAAGCATTGAAATAATGAAACTGTGAATTTAGTTTCGTTTTGAAGTTTTGGGGGTTTTGTTGTTTTTTTTAACCTTGTGTCTAATAATGAAATACTTTAAAGAATAACAGATTGTATTTCTGAGTTTGGCTCATTTCAACCTTCAGTGAGAGAAATTTTAAAGCAAGACTAGTTTCAAATTTCTAAGTCTTTGTTTTAATGGAAATCACCATAAATGTGTAATTCTCATTTGTTCTCAAAAGAGAACAGAATCTCTGATTTGCATAAAATAATCTTGATAACTTTTAGCCATTTGAATCCAGGGAAAATAATTGCATGACTGCAAAGTAAAGGTCAGCTTCTCTTTTTTAATGAATTTCCACTTTCTTACTATTCTTCTCATATTTCTGCTAGATACCAATTTTTGTACTGATTACAAAACTTTTATCACCTCATTCAGTACTTACAAAATAGGTACAATGTTCATGTGTCTATATATGTTATACGTATTTACATGTTTTTAACTCTCAAAACCAATGAAAATTCTTTTATAGTGCAGTTCTGCAAACTTGCCCCATGATGAAATTCTCCAGAGAGGTTTATTATAAATATAGGTTCTCAGGCCCGCCTCCAAAATTCCAGTTTAATAAGTCTTATATTGGGCTAGGGAATCTGTATTTTTAATCAATTACGAGATAAGTTTTAGAGTAGCTTTTCAGAGCAGATTCTATGTCTTCTATTTATTTGTAGTTTCTCTTTGCATTTGGTGCCAAAATTTTTCATTCAACACACATTTATTAAGCACCTATTAAACCAGGCACTTTGCTAGAAAATACATCCTAAAAGTGAACAGATATTGCATTAGAGATGGTCCTGTTCTCAGGAGATTACAGGTCAGTGGGGAATGCAAAAGTGTGAACAGACAGTTACAACACAGTGGGATTAAAGTATTAAGATAGGGAAAGTAGAGATTCATGAGAGCATATTAGCAGGGCTCCTCCTCTGGAATAGGGGATTAAGAAATGTTTCCTAATGATGACTACGTCAATCTTAAGACTCATAAATATAAGGGAGAGGTTGATGCTGTTTGGATGTCTAACTTGGTCAAATGGATTCACAATGATGCTTTTTCTTGAAATACGGGACCCACAATGGAGAGAACGTATTTGGAGAGGTGATGAATTTTGTTTTGAATATTGAGTTTGAGGTGCTGATGACATGTATCCAAAAGGAGCTGTCCTGGAGTGACATACTTTTGGATCTGGATGTTGGAGGATTAGTTTGAGTTGAAGATAACTATCGGAAAGTTATTCATTTATGGAATACCTGGTTACTTTGTGGAAATGGATAAGAGAGCAGAGTGGGGAAAGTGAGGGTGGGCAAGGGTAGTAAAGAATGAGCCTAGAGTAAAATTGTGCAGAACACCAACATGAGAAATGGAAAGAGAAAATGAACCTATAAAGGAGACTGAGGGCGGAGAGAAGGAGAAGGACACCCTTGAGAGTATGGACTCATGGCATGCAGGGGAGAAGAGGATCTCAAGAAAAGGGAGTGCTCGACTGTGTCAAGCACTTCAGAGTGAAACAAGACTTGCCCTAAATCAATGAGCTTAACAAAGTAATGATGAGCATTAGCTTAGTCAGAACAGTTTCAGTGGAGCAGTGGAGGTAGAAGCAAGATTGAAGTAAATTTAGGTTTGCATAGGAGGTAAGTAAATAAAAAGAGACTATTTTCAATAGGTCTGACTGATGAGTGGAGGAAAGAGGTGAATAATCCTGGAAGAGATTGATAGAGGTTTAAATTAGCTTTTGAAAGCTGATAAACATTTGAGAATGGTTGAATGCTGATGGAAGAAATGTGGAGACCATGGTTGAAGACATAAAGGAGTGGATGTCCCTCCACTCTGGGTAAAGTGGAGTCCAGAGACAGGTGAGGAAATTAATCTCTGGCCTTGTGATGAGAGACAGTGAGGAAATTTCTGATGTAATTCTATGAAAGTTTGCAGAAAATAGGGCTTTCCTGATAGTTGAGTTGGTAAAGAATCCACCTGCCACAGTTTGTAGAAAACAGTGCAATGGCTATATTTTCTCTGCAAAGTGAAGTAAAGTCATTGGACAATAACAGATAGCACTTGACCCAGATGCTAAAAAAACATAGAAGAGTTGACACTTGACATGGAGGACCCATTTGAGGCTTAGGAACTTCAGACACAGCAGATTTTCATTAAAATTGCTCAGCTGATTGAATAGCCTTATTTATCAGGTTTCCTGAAGATTCTTCACATAATTTAATCAATGAATAATATATCATAGTTAACATGATTTTAACAAATAAATCAGATGTGATCTATCATTCTTACACCTTGATTTCATCATAATGAAGAGTCTCCAAATATACGGAGAACACAACCACATATCATGTATTTGGTACTGAGCATGCTGGGCATCGAGTATACAATGATGAGTAAAAGAAGGTAAAAGGTATAGTCTGGGCTGTATCAATCCTTGCCATATTATATACTTCCAAGGCAAAACCACATAGAGAAGTCCAATTGCAACTCCTCCCTCTCTTCACAGCCCTATGAAATTCTATTTTGCTCCATGAGGTAGGAAAATTGCTCATCTACTATCCATAAAGATGCAACTCTGGACTGTAGAAGCATTAATAATCTTTTCTATTCAACTTGTCATTTCAGTAAGTCCTTAACTGGAAACAGACTAGAGAAGGAATCAAGGTCAACCCAATCAGGCAACATCCGTGGATTGTCTCAGACTTCCAGCATCTGTTGGCAAAATGATAAACATGGTCTAAGTAAATATTACAGCCACTCTGTGTGCTTGTTCCACATAGATTCCCTTTATCCTTGACAGTTCCACAATCAGAACCCGCACACAGAGAATGAAGGACTGGCTCCATTGTACTTAAGAACTGAGTATTCATTTAACTCATTTTTTTAGTTTTGAGTTTTTAATTGAAATATAGTTCATCTACAATGCTGTGTTAGTTTCAGGTGAATAGCAAAGTGATTAAGTTATGTATGCAAGCTAAGTCACTTCCGTTGTGCCCAACTCTTTTCGACCTCGTGGATTGTAGCCTGCCAGGTTCCTCTGTGCATGGGATTCTCCAGGCAAGAGTACTGGAGTGGGTTGCCTTTTTCTCCTCCCAACCCAAGGATCAAACCCACACCTTTTACATCTCCTGCATTGGCAGGAGCATTCTTTACCCCTAGCACCACCTGGAAAGTCCTTAAAGTGAAAGTGAAATTCGCTCAGTTCTGTCTGAGTCTTTGTGACCCCAAGGACTGTAGCCCGCCAGGGTTCTCTGTTCATGGAATTTTCCAGGCAAGAATACAGGAGTAGGGGCCCATTCCCTTCTCCAGGGATCTTCCCGACCCAGGGATCAAATTTAGGTCTCCTGCATTGCAGGCAGATTCTTTACCTTCTGAGTCACCAGGGAAGTCCATATATATATATATATATATATATATATATATATTCTCTTTCATATTCCTTTCCATTATAAAGTGTTACAAGATACTGAATGTATTGATAGTTCCCTGTGCCATACACTAGGTCCTTGTTATTTATCTATTTATACACAGTAGTACATATATGTAAATCCCGGCCTCCTAATTTATCTCTCCCCATCTCCTGCTATTCCCTTTTTTAGTTTTAACTTTTAAATTGCCACAACTATCTCTTTCCTGATGGATTATCCAAAGTTAAAATGAAATGTATTATGTATCTTATACAACTCATACCAAAACATCTATCCTTGTTCTAAGATTAAATGTAACACGTTGGAGCAAAATGCCATGAGTACATGAAAACTGAGAGTTAAAAGAGAAGTGGTTTGGCAAACTTAGTGTAGTTACAAGTACTCCCCCAGCTCCCCATCTTTAAGGACCACTTCTTTAAAAAAGCACAAAAACAAGGAGTCCACAGGCCTGCTGTATCTCAGAAGTCATCCAGACCCTCTTTTTAAAAATAAAGCTACAAACGTCACTTATTATTCAAAAACCTAACTTTTCTCAGGAGATCAATGGATTTGTTCAGTTAAACAGCAGTTTTTTAGGAGATCTTTTCCAGGTTCCCCCTTTGAGAGTTCTCTTTAGGAGTCTTGGGTTGGTTCAGATGGTAAAGAATCTGCCTGCAATGCAGGAGAACCAGGTTCACTCCCTGGGTTGGGAAGATCCCTTGGAGAAGGAAATGTCACTCCACTCTAGTATTCTTGCCTGGAGAATTCCATGGACAGAGGAGCCTGGAGTGCTACAATCCATGGGGTCACAAAGAATCAGACATGACTGAGTGACTAACACTTTATGATGAATGACAAAGATCATAGTGTGTATATATGGTTGTCCTACTAAGATATATAACTACCTTGAAAGAAAGGATTTGAAGGAATTGATTGCACAGTAATTTAATTACAAAAAAAAAAAAAAAGAATATCCTATATTAAGCAAGTACAGCAGGAAGAGTTTAAGAAAGAAACAGATATGAAAAAATCACAGACTTAATATTTGATCTTGTGCACTGAAGATTTAAAAACAAACTTTATAGCTATATACTTAATTGCTTTAAATATGAAGTATCAGCAATAAGGATTTTATTTCTACCACTTTTGTTTTAGTGAATATTTTTTTCAAAATGCTACCTACTCAGGGTACTTATTAAAAAAAAGGTTGAACACAGGAAAATGTGGCTGAAAAAGCATTGTTACTTCTGTGATTCTGCTCAAAATGTGTTTTGATGCCATCAGGGTCAGTTTAGGAGACAATGATTGAGGTCTTTTACAAGGTCATCCCTGCTTTAAAGCCTGTATTAAAAATCTGCTTGTCAATATGAAAATCCTTAAGCAATCCATATACCATTTCAGTTTCATGCATAGTAAATTCAAAGACATTTTAAGAAAGAAATTTTTTATAGAACTTCTATTAATTAAAAATGAACTTTTTTTTTTAAG
Seq C2 exon
AAATTAAAATCCTGGAAGACAACAAGGAATTGGAAAATGCTTTGAAAAATATTCAGCTGCCCAAAGAAGAAATTAAGAAACTTAAAGTGGATGATATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008140:ENSBTAT00000010702:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PD(1.4=29.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]