RnoINT0059116 @ rn6
Intron Retention
Gene
ENSRNOG00000005679 | Fap
Description
fibroblast activation protein, alpha [Source:RGD Symbol;Acc:621253]
Coordinates
chr3:48485431-48490590:-
Coord C1 exon
chr3:48490543-48490590
Coord A exon
chr3:48485530-48490542
Coord C2 exon
chr3:48485431-48485529
Length
5013 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
TCTTTTTTTTTTTTACAAAGAAA
3' ss Score
5.37
Exon sequences
Seq C1 exon
GCCCTGGCCTCCCGATTTCCACCCTCCATGATGGCCGCACAGACCAAG
Seq A exon
GTACTCTCTTGCATCTAGAATACTCTGAGTTCTCTATCATGAGCCCTTTCAGAGGGCAGGTTAGTTAGCCACCCTTGACGAGGTGAATCCTCGATACCATGTTGTTGTCATAAAGTTCATTATTCCTCAGTTTGAGATATTGTTTGCTTTAAACCCAACCACAAGTACTTCTTGGCAGTGGGGCCATGACATAACAGAAATCACACCATAGAGATCGAGTCTTTCATCCCCCCTGGCTTTCTAAAACCAGAGAAGATTAGAATCAGAATGAAAGCATATCCGTACATCTTCTTTCTCCTCAAAAAAGAATTCCTGCTTTTCTAGGAGGAGGGTTTATTTTTTTTCTTTTTATCACCCCACACTGGCAAAAAATTCTAGACATGGCTTCTTACCTCTTGGATTCGGTTGGGAGCAGAGGGTGATTATCATTCCAGCTCTTTTGTTTGTTTTGCATTGACAACTGTATCACATTGTTGCCATGTATGAACGCCCTGGAATTTCCGGATACCTTGTTCCACTTTTGACTGTTGTCTTCATAGCTCGCCTCTACCTTGAATTTGCAACAGTGCCTAAAATGGTTTACACTTCAAAGATGGCCATTTTTGCTCTGATCAGAGTAATCCGAGTATTTAATTTTCTTGTGTTTTTCCTGCTGGTTCCGCATTATCCTCTGATTGGCCATTAAACAACACAAGCAGATTGGAGTTGCTGGAGAACAGGAGTGGTGTGGGTTAAGGGAATGCTTCCTGCCTTCAGCACTGAGGTCTACAGCTGTCCCTGGACAGTTGGCTAACACATCGGGACACTACTTGGGGATTAGTTTTGTGTCAGTTTAATGGATCCAGAGTAGGTGAAAATGAAGTCATGAAGAAAAGGCCACAGACTCTGTCTAGGGCCAGGATTCTGAAGTAGGACAGTGGATTTAGTTTCATTTTGAAGTTGTTTTAACCTTGATTCTAATAGGAAGTGCCCTGAAAAATAGGTTAAGTTTGTTCATAAGACATATTCAACACTGAGAGGACATTTCAAAGCAACACTACTTTCAAGTCCTGAATTTCTGTTTTAATAGAATCTCCATAGATATTTAAAGTTCATTTTATCACCACTCTGAAATATAACTCAACTTCCTTTCCCCCATAACATGAATTTCTATATCCTAGAATTTTTTTCTTGATGTTCTTATTATATTCCAGGCAGATACTAATCTTTTTAATGCTTTTGAAGTTTTATTACACCACTCTCCGTGTACATCATATATATTTTTATATTTTCTAATTCAAGAAATGACTCAAATTCCTTTAGAGAACAGATCCACCAACTTGTCTAATGAAACAGTATTCGTTTACACTGCATTTGATATTTTTCTCATTCTTCCAATCAAATCTCTGGGAAGAAGGCAGCTTGAGGGTATCTGGGTCTTTGTGGTTGGAAGGCACAATGGCAGGGGTTTGCCTGCAGTCAGGGAAGAGAAATAATACAAGAATGAGACAAAGTAGATCAGTCTCTCAGTAACTTACTTCTTGAAAGCCTCTACCTCCTAAAGGTTCTAGAACCTTCCAAAAACAGTGCCAGCAACTGGAAAGCAAGCACCCAAACACAGGAGCCTAATGGGAAACATTCATATTTAAACCATACCATATGCTTACCACAAATATAAATTCTTAGGTCTTCCAATCAGGTAGATTTTAAATTGTGCTTGGCAATCTATACTCTTGATAAAGATCTAACTTTATCTAGTTATTTTATATCAAATGCTGTGCATTATGTTTCTTTTAAGTTGTTTTTAAACCCACTGTCCTTTTCATTTGCTGTCACCAATCTTCACTCAGCAAATATTTTTTTGAGCATTTACTAAATTAGGCCATCCATTGTAGTACTATTTCTCTAAAACGATGGAGACCAGATTGGGTATTTATTCCTACCCTTGAAGAGATTAGAGATTACTGGGTGATGCAAATGTATGAGCAGGCAACAATGAGAAAATGAAATTCAGTGCTAAGAGAAAGGAAATACAGGATATACAGGAAACAGAAAGGCACACAGGGAAAGCCCCTATCTGGGTTATGTCAGGTAAGAAATGTATCCTAATGGCATTCTTCAAACCTGAGATTCTTGGATAGGAAAGAAATTGATACTATTCAGATGACTGGCTTGGTTGGTGGACTGAAATGGTTGCTTTTACTCACAAAGTACTCACTGTAGAGAACAGAACTTTGAGGAGATGGTGACATTTGTTTAACATACTGATAGGATATTTGGATGGAACTCGTTGGCCTACAGTGACCCGGTTTGGGGATCTGAATGTCAAAATAGCAGTTGTACTGAAGATTACCATCAAGATGCTGTTAACTTATGGACAACTTGGTATCAATGGCCTTAGAAGTGAATGAGATGGTAAATTTAAAAAGTGAGCACTTTTTAGAGCAGGTTCTAGAAGACAGGGGTGGAGGCGACAAGATTAAAGCAAGGTAGGACCTGCGTAGGAAATTAATGGGAGTTTGTTTGTTTTGACAAAGCCACCAGTACTTCTAGTGCATTTGTCTGTGAAGAGAGAAGAAAGGTTGGCTACTAGCTGGGAATAGATACTGTTCTGTAAGACGATACATATTTGTTGAACGTTGACTGAAGAAATTATGAGGCTGAACAAGATTGCAGAATGCTAGGTGTAGAACATAACACACATCTGCAATACCAACACTGAGAAGTAGAAAAAGGGCATCAGAAGATGAAGACTAGTCTGGCTATATACATATCCTGTACTGTCCAAGCCCCAAGAGATAGAATAAGAAAGTCCCTGAAAGGTGGGAGGAGATAGGGTTCAGAAATACATGAAGAGATTAATCTCCTATGGTGGGAAAGGATGAGGAGACAATGGTGGTTTCATGAAAGTTCGAAAGCCCTAAAGAAAACAGTATGTTTCATTTCCATGCAAAGAAGAGAATCATTTGAAAGCAGTGGATTATGCTTGAACCAGATACTATGGAAACCCAGAAGAGTTGGCACTTAATATTGAGGGCCCGTCTGAAGCTCAGTTGCTTTGGGCATTACAGGTCCTCATTAAACTAAGCAACCGTATGACCTCACTTATCAGTTTCACCACAGATTCTTTACAAAATTTAATTAATATGAAATACATCACTTTAGTAGGACTTAAACAAAAACTGAATATAAGACCAATAACTTTTAAAGTTCAGTTGAGATTTGTCATAATAAGGTATGTATGAACATATGGACTATGTGCTTCATATCTTTTACCAGACCCTCAGTAGGGGAGCAGTGAGACTAGAAAGATTAGCAAAGGGAAGAAAGTATATGGTGAACCATATCACCCCTTACAACATGACAACTTCTAAAGCACAGCTCCACAGAAAAGTCCAGTTGCCACCTCTCTTACCATAGCTCTAGGAAGTTCTACTTGTACTTTAAGAAGTAGGGCAACTTTGTGCTCTCTCTTCCGGAGAACAGAACTACAGAGGCATTGATTAGGTTTTTCAAGCAAGCCTGGTACTTCGTTCAGTCATAAAACTTGAAGGTTCATTAATTAGCAAGAGAATAGCCATAAAGTTAAAAATCGTACAACATGATAACACCTTCCATTTCCAGTTTATGTGGTCAGGTAACAAGAATATCAATCATGGGTCCATTACCACGCTCTACATTCTGACCTCTGACAGGATTCATTTCTGAGGGAACGCCACATACAGACTCCACACGAGGGCAGGCAGTAGCTAGATTTCACTTAGATGTGTGCGTTTGATTTTTGTGAGTCCTAACGTGTAGTGTGTCACGCGTATTTCTTTTCTGATGGGTTACCCAAAGCTAACGTGAAACTTATTATGTCTTTTGTATAAATCATATCCAAAGCTTTCCTACGTGTGCTAAGATTAAATATAACACATTTTGGAGCAAAATGCCATGAGCATATGAAAACAGAGCTCTCTGGGAAGTGGTTTGGCAAACAGAGTAGTTATAAGTCTCCAGTTCACTGTCTTCAGTGACCGCTTTTCAAAGAGATGAATGTAAACAAAATCTTCAGGATTTATTTTGTAGCAATTACCATATCTCACAAGTCATCTACTTCTCCCTTTCACAGAAAAAAAAAAGATCTAACTCTACATATTGTATGAAAGACTAATTTTTTTCATGAAGATGTTAGTATCAAATTAAAACTTATTTCAAAGAGCTTTCTTAATATAAACCCATTTACATGTATTGCCAATCTATAACACTCAGTGGATCAACTGATTTATTCAGTTTGAAACATTGAAAGTGTGAAATATCGCTGAGCTCCGTATCAAGAGTAGCTTTTGTTTTGTTCTGAGGGAGGGTCTTAGACTTTCAACTGGGCTAATCTTGAGTTCACAATGTAAAGCAAGCTGGTCTTGAACTTGCGAAGTTCCTTCCTTCTCAATCTCCAAGGACCGGAATTTTAGGCAGGAGCCACCACTCCTTACTGTGAACAGCAGCTTTTAGATTTTTTTTTCAGACACGAGGCACAATACTGTGTGTCTAGGTTAATCCGATATAACAAGGAAAGGTCAAGATACGAATATAAAAATCTCAGAAGCAATATTTAACTCCTCATCCTGAAACACTTAGGCTTGCAGTTGTGTTACCCTTTCCCTGAGAGGGGTCAATTATCCAGAGGCTGAATTTCTCCCTTTTGCTCAACTCTTAAAGAAATGTCACCTATTCAGCCTCATGGCTTCAAAATGAAAAACTGCAGTCAGATAGGGGACAAGATGGTCAAATAAGCATTGTAGCTTAAAATGCTAAAGGTGTTAGGGGCTATGAGGACACTGGTCAGATGTGAAGTCCTCACACTCCGGCATCTCTACTGCTGGCCGCATCATGACTGCCACTGAGAAGGACCATAACAGACCCTTATTCAGTCACATCGTTGTCACCCGTACAAGCCAAAGGAATTTCATGAAAGAAATTATTTATGTAAAATTATTTATTTATTAGTATGAACTGAAGATGAACATTATATTCTTTTTTTTTTTTACAAAG
Seq C2 exon
AAATACAAGTATTAGAAGAGAACAAAGAACTGGAGAACGCTCTGAGAAACATCCAGCTGCCTGCAGTGGAAATTAAGAAGCTTGAAGACGGTGGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005679:ENSRNOT00000008148:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PD(1.4=29.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]