BtaINT0060804 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010743 | FASTKD1
Description
Bos taurus FAST kinase domains 1 (FASTKD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102031]
Coordinates
chr2:26740843-26742945:+
Coord C1 exon
chr2:26740843-26740870
Coord A exon
chr2:26740871-26742425
Coord C2 exon
chr2:26742426-26742945
Length
1555 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
TTAAATCAATTTCTTTACAGAAG
3' ss Score
6.85
Exon sequences
Seq C1 exon
GGTACAGAGTTCGGAGGCTTCTTTCCAG
Seq A exon
GTATTGTATTTCCCGGAGCGCGGAGGACTAGGGCAGGGCTGAGCTCTCTCCCAGCGGGACCGGGAGACCACATTCGTTCAGCGCCACTGTGTGCCAAGAGCCGAGGATGCCTGCCATTTTCAAAGGGTGCTGCTGCACTATATACCCTGCACCATACCTGTTCCCGGCGGGTATCTATCTCTATAGTCCCGAGATCCCTCCTTTGGTAGAGTCAGTTTCCCAAGGTCGGTTAGACTTGACACTGGTATTCTGAGCCGTGAGCTGCTTTCCTCTATCAGCTGTAGACAGGCAGGAGATTCTTGAAGATATCTTTTCTTTGTGCGGGGATTTTTGTGTATGTGTGTGTCGCAAGTCAGTCTGGGTCAGGATTCAGTGCAGATTGCCACAGAGTAGCGTGCAGACAGCTTGGCATAGCGATAGAGAGGATTTTGAGGCATACTTTTAACATTGGTTTGTTCATGTAATGAGGATGTTCAGGTTGAAAGAGTGAAAGAACTATGTGGTTGTCCCAGCTTCATTAGTACTAGAGTAGATTTTTAATCTTTATGAGAGTAGCTTTTATCTGTAAAATTCAAATGATAGTATCTCTCTGGCAGGTTGAGAGAATTTATTGGGATAATACTTTAAAAGTCCGTTGTAAACTGTTGTAGACGTGTTAGATAATATGGTTTTAGTCCCAGCTTTTCTAACCATTGTTTCTCAACTAGAAATTTAGACATACTTTAAAAACAAATTATTCTTTTTCATAATAATCTTTGGTTTCCATGTTGCTTCACCACACCCTGATACATTACTTGATTTCTTAATATTTCCTGATTGGGCTCGAATCATCTCGTTTATTGCTTAAAACCTACTTAAGGCCAATATAGTGATTAAATTGTTTGGGTGCTTTTAGAATACAAGGAGAAAGGAGCAAGAAATTATCTTGGAATTAAATATACCAGAGACTATCCTTCTGGGAAAAAAACATTTGAAAAATTGTGGCTATGAATTAATGGCTACTCTTTGTAAAAACTATAAAGGCAGTATATTTATTTATTGCAAAGAGTTTGGTTTGGGTCCCCCAACCCCATCTGGTTTTATAGTCAAATTTGAAAACTTCGTGTGTCAGATTTAACATTATTTATTTACTTTTGGCTGTGTTGGGCCTTTCTTGCTGTGCATGGGCTTTCTCTAGTTGCAGCAAGCAGGGGCTTCTCTTGCTGAGGAGCACAGGCTCTAGGTTTTAGTAGCTGTGGTGCAAGGGCTTAGTTGCTCCGCAGCATATAGAATCGTACCTGACCAGGGATCAAACCTGTGTCCCCTGTATTGGCAGGCAGACTCTTAAGCACTGGACCACCAGGGAAGTCCACACCTAACATTTTTTTAGATGAAATGCAGAAAGAAACCCCTTTTCCTGGACATTTCGCTTTGGATCAAATCCTGCTCTCTGGTTCAGGCTAAGAACAAAGTCTATAGTTATTTCAGGAAAAAAGTTGTTCCTGTAATGAGAATTTTGGAATTAATTTGGTATTAATAACATAAGTATGACCATGTTAAATCAATTTCTTTACAG
Seq C2 exon
AAGCTGCATATTGAGATGGGATTTGGAGTCATCATAATGGAAGCAAAATACATGAAGGAAAACCAGTTATTTTTATACCAGCATATTGCACCTGACTACTAGTTGCAAATGGTTTTCTTTACCTAAGAAAATTTGTGATGTAAATGAAAAGATAGTTTTTGTCCCCTAGATTCATTATTTACAATATGCTTTGCCTAAGGGCTATTCGTCCATTCTCCTCGAGAGTGTTTCACTTTCGACCCTTTAGTTTTGAACCATTAATTAGTCAGATGAATAATTGTACAGATGAAGAGCAAATATTTGGTCTTATTGAAAAAAACAAATCCCTACTCTCAGAAAAGCAAGTGGGATGTGCACTTAGTATGCTTTGGCAGTTTCAAAAGCAGAAGACCAGCTCAGTAAAAAATGTGGACTGTATCAGAAACCATCCCCAATTTCTTACTCTGTGTAATTTAGCCACAACTAAAATGGGATTCATGAGCGACAGTACCTTGGTGAATGTGTTATACATCATACAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010743:ENSBTAT00000055855:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCGGAGGCTTCTTTCCAG
R:
CTTGCTTTTCTGAGAGTAGGGA
Band lengths:
366-1921
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]