HsaINT0062145 @ hg38
Intron Retention
Gene
ENSG00000138399 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:HGNC:26150]
Coordinates
chr2:169571653-169573873:-
Coord C1 exon
chr2:169573669-169573873
Coord A exon
chr2:169572172-169573668
Coord C2 exon
chr2:169571653-169572171
Length
1497 bp
Sequences
Splice sites
5' ss Seq
CTGGCAAGT
5' ss Score
2.89
3' ss Seq
TTAAACCAATTCTTTTATAGAAG
3' ss Score
6.43
Exon sequences
Seq C1 exon
ATTTTTTCCTGGTTTGGGGGCAAGGTCTCATGGGAAAGGTCATGTCTCTCGAAGAAAGGTTATAAACCCTGAGATATGAGGGTTGGGCGAGACATCCGAGCCTGTTTCGTTCCGTGTTGGGACCAGGAATAACCCTGACTTCTGAGCTTTCATAACCCCAGGATCCTCCAGAAAATTTGCGGCGCGCTGAGGGAAAACCTTGCTG
Seq A exon
GCAAGTCGGGACTGTGTGGCAGCGGCTATTTTTCTTTTCCCACCCAGCACGTTTTCGGGCTGGGGACATAGGGTTCAGTTGAGATACGGAGGCTTCCTTCGGGATATTGGGTTCTCTGAAGTGCGGATGGACTAGGGCAGGGCTGAGACCCCATTCATTCACTCATTTGTTTAGCTCTCCTTTATGCCCGGCGCAGAAGATACCCCTTAGGGTCCCAAGGCCCTTCCTGTAGTTAAGTTCCTTCCTTAAGGTCATTCAGCTGGGGCAAAGCTGGGGACTCGACACCTTTCTATGCTAACCATTGAGCTGCCTCCACTTTGAGCAGCTCAGTGGATGAATATAGTATCTTGAGGATACCTTTGATTTGTGCAGGGTTTTCTTGTGCAGGTTTGTGACCCAGGTCAGCTTAGGTCAGGATGCTGTACTGCTTGCCACAAAATAGCCTGTACTGTCGCGTCGTTTTTTCTTGTGAACAGACTGTTTGGCATAGCCGTAGAGAGGGGTCTGAGACATGAATTTAGTGATACAGCGTTGATTTGTTTGTGTAATGAAGCTGTTCAAGTGGAAAGAACTGAGTTGTAGTCCCTGCTTCACTAGTACTAGAAGGATTTTTTAAACCTTTTTGAACCTATTTTGCCTTATCTGTAAAATGGAAATAATATCAACCTGGAAGGTTAGCTGAGAGAATTTAATGAGATAATGTGTTTCAAACGTTCTTTGTAAATGGTAACATGTTGCAGAAATATTAGATTATATGACTTTAGTCCCTGCTTTTCTAACCATTACTTCTCAATTATAAATGTAAACATTTATAGCATATTTTTAAAACAAATTATTCTTTTTTCATAATTATCTTTAGTTCTTTTATTGTTTCAGCATGACTTGAAACATTACTTAATTTCTTAGTATTTCTTGATTGGTGCTTTAATTGTGTCGTTCATTGGTTAAAACCTATCCAAGGCCAGTAATGATTAAATTATATGACTTCTTTTATTTATTTATTTTCTAAAGAAAGGAATTATTTGAGCTCTTTAAGGGCACAAGAAAAAGGGGCAAGAAATTATCCTGAAAGCAAATAAACCTGAGACCATACTTCTGAAAAATTAAAAAAAAAAAGTATATATATATGTATGTATAAATATATATGGCTCTGAATTAATGCCTACACTTTTTAGAAACTTTGAAGGTGATTATTTATTTTAAACAATTTTCCTCTTTTTCGAAAAGACAGCTCTGAGTTTGTGGGCTTTTTTTTTCCTTTTATGGTAAATTTGAAAACTTTATGTAAATGTCAGATTTAAAACACTTTTAAAATGGGGTGCAGAAAGAAGCCCCTTTTTCTGGACATTTATTTTTTGATCAAATTCTGCTATCTGGTTTAGACTAAGAAAAAGTCTTTAGTTAATGCAGAAAAAATGTATTACTTTAATTTGAATTTTGGAATCATTTTGATATTAATGATGTAAGCATAACCATGTTAAACCAATTCTTTTATAG
Seq C2 exon
AAGCTGTACATTGGAATGCGTTTACAGTCATTGTAATGGAAGCAAAATACATGAAGGAAAAACTGTTATTTGTATCCCTGCTTATTGCACCTGACGACTAGTTGCAGATGGTTTTGTTTACCTAAGAAAACTTGTGATATAAATGAAAAAAACACCTGTTTTCCTAGAGTCATTGGTTACAAATATGCTTCGTCTAAGAGCTATTTGTCCATTCTCCTGGAGAGTGTTTCAATTTCGACCCATCAGTTGTGAACCACTAATTATTCAGATGAATAAGTGTACAGATGAGGAGCAAATGTTTGGTTTTATTGAAAGAAACAAAGCCATACTTTCAGAAAAGCAAGTGGGATGTGCATTTGATATGCTTTGGAAGCTTCAAAAGCAGAAGACCAGCCTGTTAAAAAATGCTGAGTATGTCAGAGACCATCCTCAATTTCTTACTCTTCATAATTTAGCTACAAATAAATTCAAATTAATGAATGACGATACCCTGGTGAATGTGTTATACGTCACACAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138399:ENST00000453153:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTGTTGGGACCAGGAATA
R:
TGGTTCACAACTGATGGGTCG
Band lengths:
351-1848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development