HsaINT0062145 @ hg19
Intron Retention
Gene
ENSG00000138399 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:26150]
Coordinates
chr2:170428163-170430424:-
Coord C1 exon
chr2:170430179-170430424
Coord A exon
chr2:170428682-170430178
Coord C2 exon
chr2:170428163-170428681
Length
1497 bp
Sequences
Splice sites
5' ss Seq
CTGGCAAGT
5' ss Score
2.89
3' ss Seq
TTAAACCAATTCTTTTATAGAAG
3' ss Score
6.43
Exon sequences
Seq C1 exon
GTAGTGCGTGACTTCCGCAGTGCACGCTGCGCCTGCCGGGCATTTTTTCCTGGTTTGGGGGCAAGGTCTCATGGGAAAGGTCATGTCTCTCGAAGAAAGGTTATAAACCCTGAGATATGAGGGTTGGGCGAGACATCCGAGCCTGTTTCGTTCCGTGTTGGGACCAGGAATAACCCTGACTTCTGAGCTTTCATAACCCCAGGATCCTCCAGAAAATTTGCGGCGCGCTGAGGGAAAACCTTGCTG
Seq A exon
GCAAGTCGGGACTGTGTGGCAGCGGCTATTTTTCTTTTCCCACCCAGCACGTTTTCGGGCTGGGGACATAGGGTTCAGTTGAGATACGGAGGCTTCCTTCGGGATATTGGGTTCTCTGAAGTGCGGATGGACTAGGGCAGGGCTGAGACCCCATTCATTCACTCATTTGTTTAGCTCTCCTTTATGCCCGGCGCAGAAGATACCCCTTAGGGTCCCAAGGCCCTTCCTGTAGTTAAGTTCCTTCCTTAAGGTCATTCAGCTGGGGCAAAGCTGGGGACTCGACACCTTTCTATGCTAACCATTGAGCTGCCTCCACTTTGAGCAGCTCAGTGGATGAATATAGTATCTTGAGGATACCTTTGATTTGTGCAGGGTTTTCTTGTGCAGGTTTGTGACCCAGGTCAGCTTAGGTCAGGATGCTGTACTGCTTGCCACAAAATAGCCTGTACTGTCGCGTCGTTTTTTCTTGTGAACAGACTGTTTGGCATAGCCGTAGAGAGGGGTCTGAGACATGAATTTAGTGATACAGCGTTGATTTGTTTGTGTAATGAAGCTGTTCAAGTGGAAAGAACTGAGTTGTAGTCCCTGCTTCACTAGTACTAGAAGGATTTTTTAAACCTTTTTGAACCTATTTTGCCTTATCTGTAAAATGGAAATAATATCAACCTGGAAGGTTAGCTGAGAGAATTTAATGAGATAATGTGTTTCAAACGTTCTTTGTAAATGGTAACATGTTGCAGAAATATTAGATTATATGACTTTAGTCCCTGCTTTTCTAACCATTACTTCTCAATTATAAATGTAAACATTTATAGCATATTTTTAAAACAAATTATTCTTTTTTCATAATTATCTTTAGTTCTTTTATTGTTTCAGCATGACTTGAAACATTACTTAATTTCTTAGTATTTCTTGATTGGTGCTTTAATTGTGTCGTTCATTGGTTAAAACCTATCCAAGGCCAGTAATGATTAAATTATATGACTTCTTTTATTTATTTATTTTCTAAAGAAAGGAATTATTTGAGCTCTTTAAGGGCACAAGAAAAAGGGGCAAGAAATTATCCTGAAAGCAAATAAACCTGAGACCATACTTCTGAAAAATTAAAAAAAAAAAGTATATATATATGTATGTATAAATATATATGGCTCTGAATTAATGCCTACACTTTTTAGAAACTTTGAAGGTGATTATTTATTTTAAACAATTTTCCTCTTTTTCGAAAAGACAGCTCTGAGTTTGTGGGCTTTTTTTTTCCTTTTATGGTAAATTTGAAAACTTTATGTAAATGTCAGATTTAAAACACTTTTAAAATGGGGTGCAGAAAGAAGCCCCTTTTTCTGGACATTTATTTTTTGATCAAATTCTGCTATCTGGTTTAGACTAAGAAAAAGTCTTTAGTTAATGCAGAAAAAATGTATTACTTTAATTTGAATTTTGGAATCATTTTGATATTAATGATGTAAGCATAACCATGTTAAACCAATTCTTTTATAG
Seq C2 exon
AAGCTGTACATTGGAATGCGTTTACAGTCATTGTAATGGAAGCAAAATACATGAAGGAAAAACTGTTATTTGTATCCCTGCTTATTGCACCTGACGACTAGTTGCAGATGGTTTTGTTTACCTAAGAAAACTTGTGATATAAATGAAAAAAACACCTGTTTTCCTAGAGTCATTGGTTACAAATATGCTTCGTCTAAGAGCTATTTGTCCATTCTCCTGGAGAGTGTTTCAATTTCGACCCATCAGTTGTGAACCACTAATTATTCAGATGAATAAGTGTACAGATGAGGAGCAAATGTTTGGTTTTATTGAAAGAAACAAAGCCATACTTTCAGAAAAGCAAGTGGGATGTGCATTTGATATGCTTTGGAAGCTTCAAAAGCAGAAGACCAGCCTGTTAAAAAATGCTGAGTATGTCAGAGACCATCCTCAATTTCTTACTCTTCATAATTTAGCTACAAATAAATTCAAATTAATGAATGACGATACCCTGGTGAATGTGTTATACGTCACACAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138399-FASTKD1:NM_024622:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTGTTGGGACCAGGAATA
R:
TGGTTCACAACTGATGGGTCG
Band lengths:
351-1848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)