BtaINT0060812 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010743 | FASTKD1
Description
Bos taurus FAST kinase domains 1 (FASTKD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102031]
Coordinates
chr2:26753935-26756134:+
Coord C1 exon
chr2:26753935-26754333
Coord A exon
chr2:26754334-26756023
Coord C2 exon
chr2:26756024-26756134
Length
1690 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
ATATTTTTCTTTCCTTCTAGACT
3' ss Score
10.47
Exon sequences
Seq C1 exon
GTCCTTGTCTGTTTTGATGGTCAGCATATCTTCTTTAATATCACGGCGTTTTCAAGAGAAATTAGTGAACAAAGCAGAATTACTTTTTGACACTATGGATTCTTCCCAGGTCAATACTGCAAGAAGAATAGTACAATTTCTTCGAAATATTAAATATAGATATTACCCACTATTAGAAAGGTGTAATAAAGTATTTTTGAGCAATATGAACCATCTTGATTTGGACTCCATCAGTAAAATACTTAGTCTATACTACTCTCTACAGTTTCATAGTTTTGAATTTATTTTAATGACTAAGAAGAGGCTAACAGAAATGATTCCTCTGTTTGACCACCCTGCTAGCTGTGTAAAATTGTTTGTAGCATTGGGACCCATGGCAGGACCTGAAGAAAAGAAACA
Seq A exon
GTAAGTTCAGCTAAAAGCGCTTTACTTTTCCTGTTGAGAATATATGGAGTCTTCAGGCATAGATCTTGCATTTCTAGAAGTCAGAAAAGTCACTCCACTCAAAAGTAGAAGGGAGTTGAGTACTCTGCTCCTTGATCTTTCTCTGGTTATTCTAACTTATATCTCAAACTCAGTATCCTAAGGTGTTTTGAATGGGGGCCAGTAATCCTCTGGGGGTCAACTTAGCACTGATGAAGGAGAACATCGTATCAGTGCTATTCTTCTCCCTTCTTAGGCCACGTGACTGGCTTTGGCGGTTGTGGTGGTTTAGTTACTAAGTAGTGTCCCACTCTTTTGTGACCCCATGGTCTGTAGCCCCCCAGGCTCCTCTGTCCATGGGATTTCCCCAGCAAGAATACTGGAGTGGGTTGCCATTTCTTTCTCCAGGGGATCTTTCTGACCCAGGGATTCAACCTGTGTCTCCTGCATTGGCGGGTGGATTTTTTACCACTGAGCTACCAAGGAAGCCCCTGTAAAGACGAGCAAATATTAAATTAATATACGATTACTAGGTATGAGCAGACAGATTAAGTGTGATTAGTAGATTCAGTTAAGCAGGGGTTCCAGGAATTGCATATTGGGTATATGTAGCTGTCCTTGTTTCTGTTAGCAAAGACTTCATAGAGAGTTTTTGGGAGTCTTCTAAATTACATGAAGAAATTTAAGGGTACATTTTAGGAGACTGGATCAAGATGGAAATAAGATGATTATTAAAAAAACTTTTATTGGAAGTTTTTTCTTGTCACCAAGTACTGTTAAAATCTCTTATGCCAGGGTAGTACAAATTTTTGAGTCTCTGACTTCAGGAAATTTTTATTCCACTTGGAAGGATAGAAATATGTAAATACCATGACAACGTCAATATAGTTTATGAGTATACTAAAAAATAGATATAGATAGTAATTGCTGTGGGCAGACAGAAAAGTGAGAGAAAAATGTGGATTAAAATGGTTGCAGAAAAGCTATGGGAAGAAGCTGGGTTTGAAATACTTGATAAGGTTAGTGAAAAGGATGGTGTGGGACTATCCAGGATGAATAGAGAATTAGTTTGCCATGCTTTCTTCAAATTTCATATTTTGGACTAGCCTTCTAAATTATTCTAAGAGACACTTATATACTTATCACTGCACTACTTTGGATGATTTCAAAATGGACCATCTTTGTAAATATTCAGTTTATAGTGTTATAAGAAGTACTTAGTGTTAAGGTTTCTATTCATATGTAGGTATGGTGACTTCCTGGTCAGATCTTCCTAAGTTTTAAAAAATTGGGACAGTATTGAAATATCAATTGTTTGTTCTATAGCTCTCTCCTACTGAATAATTTCATTGAATTATTGTATTTTATAGCCAATGAAACCATACTTTATTTGAAAATCATTAATTAAAAACATGTTACTTATATTTTTTAAGAGACAGTTTAAGATTATGCTGAGGCCTTAGTTTCTTTGAAGAAAATACATTTTTCTTTATTTAATAATATTTTGTGTTATCCCCAATTAGGTGGGGAGAAAATTAGAATTATATATTTAATGTATTTTTTAAATTTAGTTTTTGTTTATATCATTTCTATTTATTGCCTAAGAACTGTTATTTATAAAAATTTAATAAACTAGTCATTAATTTTCTAACATATTTTTCTTTCCTTCTAG
Seq C2 exon
ACTTAAATCAACTATATTATTGATGTCAGAGGAGCTGACTGGCCAGCAGGCCCTGGCAGTGATGGGAGCAATGGAAGAGATGGAAAGCAGAAATTTACGTCTGATTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010743:ENSBTAT00000055855:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGGTCAATACTGCAAGA
R:
CTGGCCAGTCAGCTCCTCT
Band lengths:
342-2032
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]