GgaINT0046200 @ galGal3
Intron Retention
Gene
ENSGALG00000009841 | FASTKD1
Description
NA
Coordinates
chr7:20110852-20112520:+
Coord C1 exon
chr7:20110852-20111244
Coord A exon
chr7:20111245-20112409
Coord C2 exon
chr7:20112410-20112520
Length
1165 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AAATTCTTTCTTCTCTTTAGGTT
3' ss Score
10.55
Exon sequences
Seq C1 exon
GATCTTGTCAGTTTTGATGATCAGCGTATCTGATGTCATCTCACGGAGTTTTCAAGACCGATTACTACAGAAGGTGGATCAGCTACTGGGAGAAGGAGTCCACTTCAACTATGCCAAAAGAATTGTACAGTTTCTTCAACTTAGTAAACTGACACATTCTCCATTGCTAGAAAAGTGCAACAAGATTTTCTTAAAAAGCACCTCTCATCTTGATTTAGACAATATTAGTCTTATTTTTGGACTCTATGAACAGCTGGGTTTTGACAATGCGGAATTCCGCTTGACTGCTAAACAGCTTCTGTCTGAATCAGTAGATGATTATTGTGATCCTGAAGCCTTTGCAAAATTATTTTTTGTTCTTGGGCCTATGGCTGAGTCCAAGGTAAGAGAAAG
Seq A exon
GTAAGATTCTTAGCAGGTATTTTTTTTACACAGTCTTTCCCAGAAATTGAAGATCTATTGGTGTTTTGGGGAATTTCTGAGCCTATCTATGACATCGAAAAGTTAGATTTTCTACTCTGAAGTTTATAGCAATGAATTGTTTCATTACAGAAAGCAGTTTGTCTTGAAACAGTTGCATAGGAAGTTGTATCTAGTAACTAAGGGGCATGCGAATACTGTTACTCAAGGCCACCTTGTTGCTCTGTCTCCTATTACTTCCTTCCACTGTGGATAGTGGTAACAAACTTTTTGCCTTTTTCCTGAGAAATATGTGCAATAGTATGTATTACATATTCCCTTTAAGGTCTGCAGTAACTGAAACAATTGAAGTCTTGTCCTATCCCAGTTTGGTGATTGTAGAGGTTGGAAGAGAGCCGTAAGGTCATTGAGCCGAAACCCCAGATCACTGAGTCCAGCCCCTAAACACACCATATCCAATATGAAAGGGTGGCAGCATGGAATCCTCCAGCATTAATTTAGTGATTAGAGCTCTGTATTACACTGCAGATCTTGGTCTGCCTGTATTTTTTGTGCCAAAAAATCCTTTCAGGGGGTGGTATTATTCATGGCTCTCTCAAAGTCTTCAGTTTTAGGCAGAATTTATTGTATTAGTTATGATTAGCAATGTTTTCAGACTTTACTTCAGTACTATTTCCTTCTCTTCAAATCTCTGGATATTCTTTGCCCTAACTTACACAATAAATTTATTCACAGTAAGTTTAGCCAGTTAAACTGGCCAAAACCTTTTCCCAGATCTTTTTATCTTTTTCATGAAAGTCATAATGAGGCAGAACAAGTTACTAGCCTTATTTGCCCCAGGATCAGTTCAACTCATATTTGATTTTGCTATCTGCAGCTTGCTGGTTGGTGGTGAATTTTTGTTTTTGTCTACTTCCAGAAGTGTTGGACTCAGCGTCCTGCTTTAATACATTTATATCTTTGTGCCATGCTGTTTGGAAGAATGGTTCACAACATGGAATTATCTAGTTGGGGAGAATCTGTTTTCCTGTATTTCCTGATGTAGTCTGTTTGTTCTTTCCCTCTTCAGACAAAGAATATTGTTACAGTCTTTGCTGTGACTTTTCAGCAGTTTTTCTTTGAAAAATAAATTCTTTCTTCTCTTTAG
Seq C2 exon
GTTGCTAGCAACTGCAGCACTCATCGCAGAAGAATTTAGCAGTCATCAAGCATTAGTGATACTGAAGACAATGCAGAAAATGAAATGTAGACATTCTCAGCTGCTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009841:ENSGALT00000016000:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGATCAGCTACTGGGAG
R:
CGATGAGTGCTGCAGTTGCTA
Band lengths:
348-1513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]