HsaINT0062154 @ hg19
Intron Retention
Gene
ENSG00000138399 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:26150]
Coordinates
chr2:170413697-170417295:-
Coord C1 exon
chr2:170416897-170417295
Coord A exon
chr2:170413808-170416896
Coord C2 exon
chr2:170413697-170413807
Length
3089 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTTTTTTTTTTTGCTTCTAGACT
3' ss Score
9.78
Exon sequences
Seq C1 exon
TTCCTTGTCTGTCTTGATGGTCAACATATCTTCTTTAATATCACGACATTTTCAACAACAACTGGTGAACAAAACAGAACTTCTTTTTGACACCATAGATTCTTCTGAGGTCAACGTTGCAAAAAGCATAGCAAAGTTTCTTCGAAATGTTAGATATCGTTATCAACCACTATTAGAAAGATGTAATAACGTATTTTTAAGTAATGTGGACCACCTTGATTTGGATTCCATCAGTAAAATACTTAGTGTATACAAATTTCTACAATTTAATAGTTTTGAATTTATTATAATGGCTAAAAAGAAGCTAACTGAAATGATTCCTCTGTGTAATCATCCTGCTAGCTTTGTAAAATTGTTTGTAGCATTGGGACCCATTGCAGGACCTGAAGAAAAGAAACA
Seq A exon
GTAAGTTCAGTTTAAAATGCATTACTTTTTTTGTTGTGAATACGTGGAGCCTTCAAGCTTAGGTCTCCTTGCAGCTCTGGAAGGTACAAATATCACCCTATTAGGTTGTGGAAGGGAAAATAATCTCTTATGCTCTGCTCCTTGATTCTTTTTCTGATTATTCTAATTTACATCTCAAACTCTTAGTCTGTTGCTGTGTTCTGAAAGGTAAACCTCTGATACTGGGCCAACATGAAAAAAAATGAGGGGAAACGCCATGTGTTTTTATTCTCCCTTTTGTGCTACATGACTGGATTTACACATATAAGACTCCCCCACCCAGTGTAAGTCTGTGGAATATTTAGAATTATAGTAGTCATAGCAGAGGGCCATTTTATGCTTTGCTGTCTTCATCACAATAATCATCAAAGCATTTATTATGCACTGGGCATATGTTCCCATGTCAGGTTTGAGCAAATTTTGTGTGGCGCCTCTCATTTAGGAATTTCCAGTTTTGCTAGATACTGATGTAGGTAGTAATATTTGAAATATAATGATGAGCAAATATTAAATTAACATACAAATACGGTTAATAGATAAGAGTTTCTCTTCCTAGGCCATGTGACTGGATTTATACTAGACATAAACTTCCCCCACCCAGCATAATTGTATGAAATATTTAGAATTACAAGCTGGGCACGGCGTTGCACGCCTTTAATCCCATCACTTTGGGAGGCCGAGGCAGGTGGATCCCTGGATCCCAGGAATTTGAGACCAGCCTAGGCAAGATGATGAAACCTTGTCTGTACAAAAAAATACAAAATTAGCCAGATGTGGTGGTGCCCACCTAGATTCCCAGCTACTCATGAGGATCACCTGAGCCCAAGGAGGTTGAGCCTGCAGTGAACTGACATTGCGCCATTGAATTCCAGCCTGGGCACAGAATGAAACCTTGTCTCAAAAGAAAAAATAAAAGAAAAAAATAAGAATTTTATATAATAGTCCTAACACATAAGTATGATTAGTAGATTCACTTAAGCAGGGGTTCCAAGACTTGCACAATAGGGGAATCTGTATCATTACTCTGTTAGGGAAAACTTTACGGAGAAAGTTTTATTTTTTAAGAGTACTTTGTGGCTGGGTGCGGTGGATCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCGGGAGTTCAAGACCACCCAGACCAACATGGAGGAACCCCGTCTCTACTAAAAATACAAGATAAGTCGGGCATGATGGCAGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTGCAGGTTGCAGTAAGCCAAGATCGCGCCATTACACTCCAGCCTGGGCAACAAGAGCGAAACTCTGACTCAAAAAAAAAAAAAAAGTACTTTGAATTATATGAAAAAATTTAAGAGCACATCTTAAGACTATATCAAGATGGAAACAAGGTGATTATTAAAAAAAACTATTGGGGCCCAGCACGGTGGTTCACACCTGTAATCTCAGCACTTTGGGAGGCCAATGCTGGCAGATCACTTGAAGTCGGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCGACTCTACTAAAAATACAAAAAAAAAGGGCCGGGTGTGGTGGCTCATGCCTGTTATCCCAGCACCTTGGGAGGCTGAGGCGGTTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTTTCTAGTAAAAATATAAAAAATTAGCCGGGCGTGGTGGTGGGCACCTGTAATCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGACTGAGGTTGCAGTGAGCCAGGATTGCGCCATTGCACTCCAGCCTGGGCAACAGGAGCGAAACTCTGTCTCAAAAAACAAACAAAAAAATACAAAAAATAATTAGCCGGGAGTGATGGCAGGTGCAATGGTGGGCATCTCTAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCTATCATGCTCCTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAACAGACGAAGAAACACACACACGAACAAACTTTATTGGAACCGTTTTTTGTCACCAAGTACTGTTAAAATCTCAGTGCTAAAGCAATAAAACAGTTGGGTTTAACTGAGTCTGTCTTCAAGGAATTTATATTGCAATTGAGAGGATAGATATAATTGAAATATGTAAATACTGTAACAACATAGTTTATGAAGAAACAATAAAATTAGTGATATGGATAGTGCTGTGAGCAGACAGAAGTGAGAGAAAAATATAGACTGAAGTGGTTGGGAAAAGTTTGTGGAGAAACTGGGTTTGAAACCTTTGAAAAGGTTGGTGGAAAGGATGGCATGGAGTTATCCATGTGAATAGACAATTAGTTTATCCTATCAGATGTCACGTTTCGAGCTTGCTTTCTAAATGATTCTAAAAAATACACGTATCATGGTACTTAACATTACTGCACTACTTTGGATAGTTCAAATGACAACTAATCATAGTCAAAATGGACCAGCTTTGTTAATTTTCAGTTTATACTGTTATATCAAGTGCTTAGTATATGAGATTTCTGATAATATGCAGGTTTATTGACTCCTAGATGTTCCTATTCAGTTTTAAAACATTTGGGAAATTGTCAGAATATCAACTGTTCATTTCTTAGCTCTCTAGTATTGAATAATTTCACTGAATCATAGTATTTTATAACCATTATAACCTTGTATTATTTGAAAATCTTAAAATATCTTTTACCTGTATTTTTCAAACAGTTTAAGATTGGATTATAATGAGGCCTGAATTTCATTGAAGAAGACAATATATTTTTCTTTATTCAGTAATATTTTATATTCGAGTAATGTGGGGAGAACACTAGAATTATATATTGGATTCAGTTTTTGTTTATATTTTTTTTCCTATTTGTTACCCAAGAACTGTTATTTAAAAAAAATTGCAAGCTAATTTTCAGTCTTTCAACCAAAAACTTTTTTTTTTTTGCTTCTAG
Seq C2 exon
ACTTAAATCAACTATGTTATTGATGTCAGAGGACCTAACTGGCGAGCAAGCCCTGGCAGTGTTGGGAGCAATGGGAGATATGGAAAGCAGAAACTCATGTCTGATTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138399-FASTKD1:NM_024622:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)