BtaINT0061119 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26870841-26871644:+
Coord C1 exon
chr7:26870841-26870963
Coord A exon
chr7:26870964-26871521
Coord C2 exon
chr7:26871522-26871644
Length
558 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
ATTCTAAATGTTCTTCCTAGATA
3' ss Score
6.14
Exon sequences
Seq C1 exon
ATATCGATGAATGCTCCTTCCAAAATATTTGTGTCTTTGGAACATGTAATAATTTGCCTGGAATGTTTCATTGTATCTGTGATGATGGTTATGAATTGGACAGAACAGGAGGGAACTGTACAG
Seq A exon
GTATGGCCAGTTAAGGGCTTAATTGCATTCTTATTAATTGAAAAGAACATTTTGTGCTAGACATAAAAGTTCCCCAAATTTCTGCTTAGCCTGCTATGCCTCAGGTTATGCATTTTTTTTGAAAAAGGAAATTACATTCTGATACATTGATTTCTAACTGTGAGATTGATTTTTTGTAATGTAAACAGCTTAATTTTAAATATTCAACATGAAATTAGTAAAATATCTGTATATATTTATGATGTCCACATATGTGTACAGTTATACATATATTTAAGTTTAATTCAAGCAAGAAATGATAGCATGATTTTCTTCAGAATTGCAAGATTTTGATATAATTTACTTATTTATTTATTAAAGATATTAAATGATACCATCATGAATACTGTCTGATATATGGAAACTGCTTTAGGTGTGTACAAGGATTTCATTGTGCTGAGTCCCTCCTAAAGATTTTTAGTCTACTGACTTTCAGAATTTCCACCAAATCCTTTGGAACAGCAGCATGCCCAAGGAAAGTAAAGATGTTGATGTGGGCATTCTAAATGTTCTTCCTAG
Seq C2 exon
ATATTGATGAGTGTGCAGACCCAATAAACTGCGTGAACGGCCTGTGTGTCAACACTCCTGGTCGCTATGAGTGTAACTGTCCACCCGATTTCCAGCTGAACCCCACCGGTGTGGGGTGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307:ENSBTAT00000020360:69
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCGATGAATGCTCCTTCCA
R:
CGACACACCCCACACCGG
Band lengths:
246-804
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]