HsaINT0062466 @ hg38
Intron Retention
Gene
ENSG00000138829 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr5:128318149-128319001:-
Coord C1 exon
chr5:128318879-128319001
Coord A exon
chr5:128318272-128318878
Coord C2 exon
chr5:128318149-128318271
Length
607 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
ATTTTAAATGCTTCTCCTAGATA
3' ss Score
5.34
Exon sequences
Seq C1 exon
ATATTGATGAATGCTCCTTCCAAAACATTTGTGTCTTTGGAACATGTAATAACCTGCCTGGAATGTTTCATTGCATCTGCGATGATGGTTATGAATTGGACAGAACAGGAGGGAACTGTACAG
Seq A exon
GTATGGTCAGTTACCAGCTAAGTTGTGTTCTGATTCATTGAAATGAGTATTCTGTGCTAAGCATAAAAATTCCTGAGATTTCTGCTTAGCTAATCTATGCATTAGGTTACACATTTTTCAGAAAAAGAAAATTATATTCAGATGCATTTATTTGTAACTATGGAATTGATGCATTTTTATGTAAATAATATTAAATTGTTATCTGTATGATTGTTAAATATCTGACATGAAACTAGTAAAGTGTCTCTTTATATATATGTTCATGTATATGTATATATAGTACATGTATATATATATATACATGTATATATGTGATTTTTGTTAAGCAAATAGTGACATAATTTTTTCGTCCTCAGAGTTGCAAATTTTAATTAATTACAATGTATTTGTTAAGGATGTTAAACGCTGTCATAAATACTCTGTCCTTGATGTATGGAACCTGTTTTAGGTATATACCAAAATTTAAGATATTTATTTTATTGTGTTGAGTCTTTCCTAGTGATCTTTAATCTACTCACTTGCAAAAATTCCACCAAATTCTTTGGAACAGCAGTATGCACAGAAAAAGTAAAAATGGTAACCTGGGCATTTTAAATGCTTCTCCTAG
Seq C2 exon
ATATTGATGAGTGTGCAGATCCTATAAACTGTGTCAATGGCCTATGTGTCAACACGCCTGGTCGCTATGAGTGTAACTGCCCACCCGATTTTCAGTTGAACCCAACTGGTGTGGGTTGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138829:ENST00000508053:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTGATGAATGCTCCTTCCAAAAC
R:
CAACACAACCCACACCAGTTG
Band lengths:
246-853
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development