GgaINT0062425 @ galGal3
Intron Retention
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55689181-55689792:-
Coord C1 exon
chrZ:55689670-55689792
Coord A exon
chrZ:55689304-55689669
Coord C2 exon
chrZ:55689181-55689303
Length
366 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
ATGTAGCCTTCCTATTTCAGATA
3' ss Score
8.5
Exon sequences
Seq C1 exon
ATATCGATGAATGTTCCTTCCAGAATATATGTGTATTTGGTACCTGTAATAATCTACCAGGAATGTTTCATTGCATCTGTGATGATGGCTACGAACTAGATAGAAGTGGGGGAAACTGTACAG
Seq A exon
GTATTTTTCATCTGTGCATATGTGTGTTAAAACTAAAACATTTTTTAATTACACCAAGTTAATTGAAACAAGGGTTCACAAAACATGCATAGTATTCTCTTGCAACAGTACAAATGCAGTTTTTTCCCTGCTAATCGCATGCTTTGAAGTTATTTAAGAATGGAATAAAACAATTGCTTCTTAAATATGCAACAGTACAAAAATTATTAACACAAAATTGTTTGAAGAATTAATAGTTTTTTCCTTCAGTTTCATTTAGCAGTAACTTGCATTTGAAATTTTCCTGCTTGTTTTGCCTTAAAAATGTAAAATGTTTCTTCTTTCCATCTAGTGAATGGATTTATAAATGTAGCCTTCCTATTTCAG
Seq C2 exon
ATATTGATGAATGTGCTGATCCCATTAACTGTGTTAATGGTCTTTGTGTAAATACTCCTGGAAGATACGAATGTAATTGTCCTCCAGATTTCCAGCTGAATCCTACTGGAGTGGGTTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686:ENSGALT00000023666:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCGATGAATGTTCCTTCCAGA
R:
CCACACAACCCACTCCAGTAG
Band lengths:
246-612
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]