BtaINT0061176 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18048167-18048585:-
Coord C1 exon
chr7:18048463-18048585
Coord A exon
chr7:18048293-18048462
Coord C2 exon
chr7:18048167-18048292
Length
170 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCCCTACCCTGGTCCCCCAGATG
3' ss Score
9.09
Exon sequences
Seq C1 exon
ATGTGGACGAGTGCCGCACCAGGAACGGTGGTTGCCACGTCCACTGTGTTAACACTAAGGGCAGCTACCAGTGCGAATGCGGACCTGGCTACTCTCTGATGCCCGATGGGAGGGCGTGTGAAG
Seq A exon
GTGGGTGGGTGCGGCACCCTCCCTCCGGCCTGGGATGTGGGAACCCACCTGGCCCGGCCCAAATGAAGCCATCCACACCCTAGCCAGGCCACTGACCCCGCAGAAGTGTCCCTGGGGTTCCCCCTCTGTCCCTTCCCACCTGCAACCCGACCCCTACCCTGGTCCCCCAG
Seq C2 exon
ATGTGGACGAATGTGAGCAGAATCCGGACATCTGTGATGGGGGCCAGTGCACCAACATGCCAGGGGGTCACCGCTGCCTCTGCTATGACGGCTTTGTGGCCACGTTGGACATGAGGATGTGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595:ENSBTAT00000035613:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(83.3=47.6)
A:
NA
C2:
PF126622=cEGF=PD(12.5=7.0),PF146701=FXa_inhibition=WD(100=86.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGACGAGTGCCGCA
R:
CATCCTCATGTCCAACGTGGC
Band lengths:
242-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]