RnoINT0059617 @ rn6
Intron Retention
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53129332-53129730:-
Coord C1 exon
chr18:53129608-53129730
Coord A exon
chr18:53129458-53129607
Coord C2 exon
chr18:53129332-53129457
Length
150 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
GGCTACCTTTGTGTCCTCAGATA
3' ss Score
9.14
Exon sequences
Seq C1 exon
ATATCGATGAGTGTATGATAATGAACGGGGGCTGCGACACCCAGTGCACCAACTCAGAAGGAAGCTACGAATGCAGCTGCAGCGAAGGGTACGCACTGATGCCAGACGGACGATCGTGCGCAG
Seq A exon
GTACAGCCAGGATAAGACATGTGCATGCCGTGGTTGCTCTGTTACAAACGTGGCTCCAGACTTGGTCCAGTAGAGCTGAGGGGAGAAAATGTGTCCGGCACCAATGAAAGACATCCCTGCTTTGACCCGAGGCTACCTTTGTGTCCTCAG
Seq C2 exon
ATATCGACGAATGTGAAAACAACCCCGACATCTGTGACGGCGGCCAGTGTACCAACATTCCGGGGGAGTATCGCTGCCTCTGCTACGATGGCTTCATGGCGTCGATGGACATGAGAACATGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219:ENSRNOT00000066548:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGATGAGTGTATGATAATGAACGG
R:
CATGTTCTCATGTCCATCGACG
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]