BtaINT0061113 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26859429-26859841:+
Coord C1 exon
chr7:26859429-26859551
Coord A exon
chr7:26859552-26859715
Coord C2 exon
chr7:26859716-26859841
Length
164 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
TGTTGATTTTGTGCCATCAGATA
3' ss Score
6.94
Exon sequences
Seq C1 exon
ATATTGATGAGTGCATGATAATGAATGGAGGCTGTGACACGCAGTGCACTAATGCAGAAGGAAGCTATGAATGTAGCTGCAGTGAAGGGTATGCCCTGATGCCCGATGGGAGGTCATGTGCAG
Seq A exon
GTACGGGAAGGAAAATCCACGGACTGTGTGTGCATGTGTGTGTCTGGTTAATTTTATCTTTCGAATCTGGCTCCAGATATTTTGAGCGGAACTGGATGGAAAAGATACGTGAGCTTAATAAAAGCCGTTCTTGTTTTCATTTGATGTTGATTTTGTGCCATCAG
Seq C2 exon
ATATTGATGAATGTGAAAATAATCCTGATATCTGTGATGGTGGGCAGTGTACCAACATTCCTGGAGAGTACCGTTGTCTGTGTTATGATGGCTTCATGGCTTCCATGGACATGAAAACGTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307:ENSBTAT00000020360:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGTGCATGATAATGAATGGA
R:
TGCACGTTTTCATGTCCATGGA
Band lengths:
242-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]