GgaINT0062419 @ galGal3
Intron Retention
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55698063-55698440:-
Coord C1 exon
chrZ:55698318-55698440
Coord A exon
chrZ:55698189-55698317
Coord C2 exon
chrZ:55698063-55698188
Length
129 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGT
5' ss Score
8.79
3' ss Seq
ATTTTCTACTTTTATTTCAGATA
3' ss Score
9.58
Exon sequences
Seq C1 exon
ATATTGATGAATGTATGATAATGAATGGTGGCTGTGACACCCACTGCACCAACTCAGAGGGCAGCTACGAATGTAGCTGCAGTGATGGTTATGCTCTAATGCCAGATGTCAGGACGTGTGCGG
Seq A exon
GTATGTTTTAATATCTTTATTGGATTTCATTTAAAATGTATTGAAAGTTACAGCATTTGAGCCAATATGAATATGATCATATGTAAGTCTGCACCAGTGTGAGTGAACTATTTTCTACTTTTATTTCAG
Seq C2 exon
ATATTGATGAATGTGAAAACAATCCAGATATATGTGATGGAGGGCAATGTAGTAACATTCCAGGGGAGTATCGCTGTCTCTGTTATGATGGATTTATGGCTTCTATGGACATGAAAACTTGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686:ENSGALT00000023666:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATGATAATGAATGGTGGCTGTGA
R:
ACAAGTTTTCATGTCCATAGAAGCC
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]