DreINT0010663 @ danRer10
Intron Retention
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4106994-4107326:-
Coord C1 exon
chr22:4107204-4107326
Coord A exon
chr22:4107120-4107203
Coord C2 exon
chr22:4106994-4107119
Length
84 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACA
5' ss Score
4.6
3' ss Seq
AGCCGTGTGTCTCTCTGCAGACA
3' ss Score
10.62
Exon sequences
Seq C1 exon
ATATCGACGAGTGCACCATCATGAACGGCGGCTGCGACACACACTGCACAAACTCGGAGGGAAGCTACGAATGCAGCTGCAGCGAAGGATACGCGCTCATGCCTGACCTCAGGACCTGCGCTG
Seq A exon
GTAACACACACTGTCAAACTCGCACACATTTACATACACGCATACAAACTGACCTCTCAGAATGAGCCGTGTGTCTCTCTGCAG
Seq C2 exon
ACATCGACGAGTGTGAAGACACACCAGATATCTGCGACGGCGGCCAGTGCACGAACATCCCCGGAGAATACCGCTGTCTGTGCTATGATGGTTTCATGGCCTCTATGGACATGAGGACATGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237:ENSDART00000167748:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACTGCACAAACTCGGAG
R:
GCACAGACAGCGGTATTCTCC
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]