BtaINT0061179 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18045123-18045563:-
Coord C1 exon
chr7:18045441-18045563
Coord A exon
chr7:18045246-18045440
Coord C2 exon
chr7:18045123-18045245
Length
195 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CTGGGTTCCATCTCCTGCAGACC
3' ss Score
9.09
Exon sequences
Seq C1 exon
ATGTAGATGAATGTCAGCTTGGGGGACACAGCTGTGACAGTCATGCCTCCTGCCTCAACACCCCTGGGAGTTTCAGCTGCAGTTGTCAGCCAGGCTGGGTTGGGGACGGCTTCAAATGCCGTG
Seq A exon
GTAAGTGTCTGGGGGCCAGAGGTCTGGACAGAGAAGCAGAGGTGGGTGGGGTGAGTGGGCAGGCTACAGCCGGGCAGAGGTGTCTGGGTTCAGGCATGTCCATGGGGGAGGGTCAGGGTTGGGATTTGGAGGGTCTGCCTCCCCACAGCCCCCCAGCGCACACACCTGGGGGACCCTGGGTTCCATCTCCTGCAG
Seq C2 exon
ACCTGGATGAATGCGCCTCCAAGGAACATGGGTGCAGCCCGAGAGCTGACTGCCTCAACGCCCCCGGCTCCTACCGCTGTGCCTGTCGCCTGGGCTTCTCTGGGGATGGCTTCTCTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595:ENSBTAT00000035613:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
NA
C2:
PF129472=EGF_3=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAATGTCAGCTTGGGGG
R:
CTTCACAAGAGAAGCCATCCCC
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]