HsaINT0062525 @ hg38
Intron Retention
Gene
ENSG00000142449 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr19:8111648-8112099:-
Coord C1 exon
chr19:8111977-8112099
Coord A exon
chr19:8111771-8111976
Coord C2 exon
chr19:8111648-8111770
Length
206 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CTGGGCTCCATCTCCTGCAGACC
3' ss Score
9.07
Exon sequences
Seq C1 exon
ATGTGGATGAATGCGAGGTTGGAGGACACAACTGTGACAGTCACGCCTCCTGTCTCAACATCCCGGGGAGTTTCAGCTGTAGGTGCCTGCCAGGCTGGGTGGGGGATGGCTTCGAATGTCACG
Seq A exon
GTGAGTACCTGGGGGCAGGGAGTGGGGGCAAAGCAGTAGAGGTAGGTGGGGGGCAAGGCGGTGGGGGGCAAGGCAGTGGGAGGGTGGGATCCGGGAGTGTCTGCAGGGGGGCAGTCAGGGTTGGAGGGTTGATGGGTCTTTCTCCCTTCTGCGCCCACCCAATGCACACACCATGGGGTGGGGGGTCTGGGCTCCATCTCCTGCAG
Seq C2 exon
ACCTGGATGAATGCGTCTCCCAGGAGCACCGGTGCAGCCCAAGAGGTGACTGTCTCAATGTCCCTGGCTCCTACCGCTGCACCTGCCGCCAGGGCTTTGCCGGGGATGGCTTCTTCTGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142449:ENST00000600128:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATGAATGCGAGGTTGG
R:
TCGCAGAAGAAGCCATCCCC
Band lengths:
244-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development