BtaINT0061192 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18027382-18028076:-
Coord C1 exon
chr7:18027951-18028076
Coord A exon
chr7:18027508-18027950
Coord C2 exon
chr7:18027382-18027507
Length
443 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TGCTGCCTGCCCTCCCTCAGGAC
3' ss Score
9.82
Exon sequences
Seq C1 exon
ACGTGGATGAGTGCACCAGCGGGGAGAACCCCTGCCAGCAGAACGCCGACTGCGTCAACATCGCTGGCAGCTACCGCTGCAAGTGCGCCCAAGGGTACAAGCTGTCGCCGGGCGGGGCTTGCGTGG
Seq A exon
GTAAGTGGGGACATAGTCGGGAGGTGAGGGAGTAGGACAAAGCCAGACTCTGTCTCCTGCTGGGACTCGGGTAGGGCGTGGTCCTGTCCGGACTTTGCTCCTTGGCTGCGGTTTTTTTTTTTTTTTTTTTTGGCCATGTCACTTTACAAGAGGGACCGTAGTTCTCGGACCAGCGATCAAACCCGTGCCCCCTGCAGTGGAAGCGCACAGTCCTAATCGCTGGAGTTGCCACCTTGGCTGTACTTTGGGGTGGGGGTGCCGAGGGCATCTGTTAATGGGGGAGTCGTGAGGATGAAATGGGAGGTGAAGTGTCTCCCCTGGGGCAACAGCTCACATGGGGAGCTTCCCCGCAGGGTCGGGCTCCCCCAACTGCAGCATGTGACGGCTCAGGACATGCTGTGGGTGGGAGCCCTGGGGACACTGTGCTGCCTGCCCTCCCTCAG
Seq C2 exon
GACGGAACGAGTGTCGAGAGATCCCGAATGCCTGTAGCCATGGCGACTGCATGGACACAGTGGACAGCTACATGTGTCTGTGTCACCGTGGCTTCCGGGCCTCAGCGGACCAGACCCTGTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595:ENSBTAT00000035613:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF062476=Plasmod_Pvs28=FE(34.4=100),PF0764510=EGF_CA=WD(100=95.3)
A:
NA
C2:
PF062476=Plasmod_Pvs28=FE(34.4=100),PF0764510=EGF_CA=WD(100=93.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGAGTGCACCAGCG
R:
CATGCACAGGGTCTGGTCC
Band lengths:
249-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]