HsaINT0062538 @ hg19
Intron Retention
Gene
ENSG00000142449 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:18794]
Coordinates
chr19:8161328-8161890:-
Coord C1 exon
chr19:8161765-8161890
Coord A exon
chr19:8161454-8161764
Coord C2 exon
chr19:8161328-8161453
Length
311 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CATGCTCTCTGCACCCCCAGGAC
3' ss Score
10.2
Exon sequences
Seq C1 exon
ATGTCGATGAGTGTGGCAGCAGGGAGAGTCCCTGCCAGCAGAATGCTGACTGCATCAACATCCCCGGTAGCTACCGCTGCAAGTGCACCCGAGGGTACAAACTGTCGCCAGGCGGGGCTTGTGTGG
Seq A exon
GTGAGCAGGGTCCCTGGGAGGAGGTGAGGGAGCTGGGCTCTGTCACCCATGGGGACTTAGATGGGGTATGGCTCTGTCCAGGTCTTTCTCCTTTTCTATACTATTAGGGGGGTGGGGGATGTATTGAGAGTGTCTGTTAATAGGATGTGATAGAGGTGAGAGCTCAGGTCCATGCAGACAGCCTGACGCCCCTGGTGGAAGTTTGAGTGGGGAACTTCAAGGCAGATTCTGGCTTCCCCATTGCAGTAGGGAGAGCTCAGGCAAACACTGTGGTAGGAGCCCTGGGAACACCATGCTCTCTGCACCCCCAG
Seq C2 exon
GACGGAATGAGTGTCGGGAGATCCCGAATGTCTGTAGCCATGGTGACTGCATGGACACAGAAGGCAGCTACATGTGTCTGTGTCACCGTGGATTCCAGGCCTCTGCAGACCAGACCCTGTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142449-FBN3:NM_032447:42
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF062476=Plasmod_Pvs28=FE(56.8=100),PF062476=Plasmod_Pvs28=PU(22.2=81.4)
A:
NA
C2:
PF062476=Plasmod_Pvs28=PD(29.7=51.2),PF062476=Plasmod_Pvs28=FE(26.6=100),PF0764510=EGF_CA=WD(100=93.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCGATGAGTGTGGCAGC
R:
ACAGGGTCTGGTCTGCAGAG
Band lengths:
246-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)