BtaINT0061629 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000712 | FBXW2
Description
Bos taurus F-box and WD repeat domain containing 2 (FBXW2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076974]
Coordinates
chr8:112067742-112070035:-
Coord C1 exon
chr8:112069841-112070035
Coord A exon
chr8:112067876-112069840
Coord C2 exon
chr8:112067742-112067875
Length
1965 bp
Sequences
Splice sites
5' ss Seq
CGGGTGGGT
5' ss Score
6.14
3' ss Seq
GTGTGTGTTGTGTGCACTAGTGT
3' ss Score
6.72
Exon sequences
Seq C1 exon
GGTCAGACGACTTGTCTGCAAAGCTGTGGGATGTGAGCACAGGGCAGTGTGTTTATGGCATCCAGACCCACACTTGTGCTGCGGTGAAGTTTGATGAGCAGAAGCTTGTGACAGGCTCCTTTGACAACACTGTGGCCTGCTGGGAGTGGAGCTCCGGAGCCAGGACCCAGCACTTCCGGGGGCACACGGGGGCGG
Seq A exon
GTGGGTCGCCTTTCTTCAAGGCTTTCCAGTTACTCTAACTTCGTTGCTTAAGGCCAGGGGCCAAGAATGTGGTCCCTCTTTTGTTTTTGTTTTTTAATGTAATCTGTCATTCCCCCTACTTCTTCTTCAGTCAGTACAGTTAATCCCTTACTCAGGTTATTCTTACAGTTTTACCTCGAGCTTTGCTTTTCCTTGGCCCGTTTTTTAACTCGCAATGCCTTTGTACCCTTAGGCGAGGAGAGGCAGTTCTTTTCTCCTGTTTCATTTATTTCCTGTTTGCACAGTCGGCCCCCTTTGTTTTGATCAAATTCCATACCTCCAAATTGAGTAAATGTAAATTCAGTCCACTTTATTTGTAGAGTTAGGACTGGAAATCCTTGTTAGTGACTACACAGATTACATCCAGTTGGAGCTTGGTTGATGATAATCTGACTGCTGAGAGACCAGATGAAAAGGAGGTCCCCGCGTGTTTCCTGATGAGGTTGCAGCAGCCTTAGTCTGTAAACTGGCCACCTGAATGAAACCTTGTGACCAGAGCATCTCCTCTGCCGAGTCGTATCCTGGAGCTTTGTGCAGCAATCACGTGGTCTAGTTCCCTTCTCCTCCCCCGCCCCCATTACCCACTGCATTAGCCTCTGAGAGTCACAGTCTGTGCTCTTGAGCATCATTTATGAGCGCCTTCCTGGACACCCTGAACAGGTTGAGTCTCTCTGCTGTAGGCTTCCAGTAACCTGTGTAACACCTGTCATCCAAGCGAGTCTGGTAACTGGTTCCCCACCAGCCTGTCAGCGCTGGAACGGCAGGGATCCCACCTGTCTTATTCACCCTTAGGTCCTGAATTCCTTGCATGGTAATTCTTTAAATTTAGCTGTTTTATGGCAAAAAAACAACAACAATAAACCCCACCGAATCTGCCCCCCCCCATTTTGTTTGTCATCCTGTACATTTTTCTTCAGTCTGCTACCACTTGTTTGTGGTAATTAATATTTGAAGATACATGATTTAATATGGAGCTTATGTAGCAAACTGAGTGCAGTATTCCACATTGTCAAGGATTGCACCTGTTCCAGGTGAGTTTACACCTGGTTAGCTTAGAGAGCCCTGTTCTAAAAAATTTCCTCCTTACTGTTCCCAAGACATTGCTGTGGCTTTTCCTAACTCCGCGCCTTTGCTGCTCCCTCTACCTGCAGTATTCTCTTTCTTTTCTTGATAAACTCTGCTCATCCTTCAGGGCCCACCTCCAATATCGCCTCTTCCCTGAAGTCCTCCCTGATCCCCCTGGGCAGAGTTAGTCATTCTCCTTGGTGTTTCCCTAGCAAGAGGTAAACATTTACTTTTTTTTTGGACTTCCTTCTCTATCCCTCACTTAGTCAGAGTTCCTTAAAGAAAAGAGCAGTGTCTTCATCTCTGCGCCCCTGGTGTCCCTTCAGAGCTTGACGGGCATTTGAACACAAGTACTTGTTATACTCAGGCACTGTTTAGGTGCCAGGGATATAGGTCTGAAGAAGTCAGACAGTTGAGAGAATGGCTCAGTCTGAACTTAAGATCTTCGCTTTGTGTTTCTCATTACCCTGGCTTTTCTTGAGTATGAGTACGCTTGACATTTTATCTTACGCAGTAAATAGTACAAATCTCAGTAGGTCCACCTGTTTTTCTTCTCAGTCCTGAGAAGAAATGCCTGTATCTCCTACACTTGTTTGTCTCTGACTCTGAAGCTAGTACAAATATGAGAGATTGTATATTCCAGGGACTTTCCATCCTTAGGATAATAAGCTATAATACTAAGAATTTTGCGATGGGTATTTTTTTTAGCAAAAAATTGCTAGTTGAGAAAGCACCCTTCTTACAGTAGTTCTGGTTAAGAAACCACACACTTGGGCACTGGGAAGAATAAGTGTAATTGAACTCTGTCATACAAGACCCTCAGGCAGAGGCGTGTTTAACTGTGTGTGTTGTGTGCACTAG
Seq C2 exon
TGTTCAGTGTCGACTACAACGACGAACTGGACATCTTGGTGAGTGGCTCTGCAGACTTCACTGTCAAAGTGTGGGCTTTATCTGCTGGGACGTGCCTGAACACACTCACCGGGCACACAGAGTGGGTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000712:ENSBTAT00000000956:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(28.6=15.2),PF0040027=WD40=WD(100=53.0),PF0040027=WD40=PU(33.3=19.7)
A:
NA
C2:
PF0040027=WD40=PD(64.1=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTCTGCAAAGCTGTGGGA
R:
CTTGGTGACCCACTCTGTGTG
Band lengths:
319-2284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]