BtaINT0061631 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000712 | FBXW2
Description
Bos taurus F-box and WD repeat domain containing 2 (FBXW2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076974]
Coordinates
chr8:112062829-112063698:-
Coord C1 exon
chr8:112063612-112063698
Coord A exon
chr8:112062999-112063611
Coord C2 exon
chr8:112062829-112062998
Length
613 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TAACTTTCTTTTATCTGTAGATT
3' ss Score
9.67
Exon sequences
Seq C1 exon
GTGGTCTTGCAGAAGTGCAAAGTCAAGTCTCTCTTGCACAGCCCTGGAGACTACATCCTCTTAAGTGCAGACAAATATGAGATCAAG
Seq A exon
GTGAGGTTTTTTTCCCTTGATTAATTTGCTTCATGAAAGAGTGTGGTACAGGGAAATATTTCAAGGGAGGCAGGAATGTCTTTAGTCTAAGCCCTCTTAAACCCATTGGAAAGAGAATTAATTCATTTTCTTTGTGCTCTAGGCAGTTTCTAACTCTGATTTATAAATGAAGGGGGGAAAATCCACAGAAATATATCTTCAGTGCATTCTTACCATTTTCTTAAGACATGTATCTCCTGCCCTCCTCCATTCTTAGATATGAAGTATGAAAACATAAACATCTATTTGTATAATAATAAAAGCAATTTTCAAAAAGTTTGCAGAGCACTCCGGCATATATTTTTATTTCATCTTCTAAAATGTTCCATATGGTAGGCACTGTCTTCATTGCAGGAACTTGGGTTCAGAAGAGGTTGAATATTTTACACAAGATTACACAACACATAGGTGCCAAATAAGAATTTGAGCCCCTGCCTCAGCTGTGAAGCCTGTGGTGTCTCCAGTTCACTTCACTTTGTTTCTGACTTAAGCAGACACAAGCCACATTGTTTAAAAATGGGTTTTTCTCTGGTGATGCGATCTATCATCTTTCCTAACTTTCTTTTATCTGTAG
Seq C2 exon
ATTTGGCCAATTGGGAGAGAAATTAACTGTAAGTGCTTAAAGACGCTGTCTGTCTCTGAGGATAGAAGTATCTGCCTGCAGCCAAGACTTCATTTTGATGGCAAATACATTGTCTGTAGTTCGGCACTGGGCCTCTACCAGTGGGACTTTGCCAGTTATGATATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000712:ENSBTAT00000000956:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGTGCAAAGTCAAGTCTCTCT
R:
GAGAATATCATAACTGGCAAAGTCCC
Band lengths:
246-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]