GgaINT0125788 @ galGal3
Intron Retention
Gene
ENSGALG00000000864 | Q5ZK75_CHICK
Description
NA
Coordinates
chr17:11107421-11108187:-
Coord C1 exon
chr17:11108101-11108187
Coord A exon
chr17:11107591-11108100
Coord C2 exon
chr17:11107421-11107590
Length
510 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
AAACTGTTTTCTAATTCTAGATT
3' ss Score
7.58
Exon sequences
Seq C1 exon
GTAGTTTTGCAGAAGTGCAAAGTCAAATCTCTTATGCATAGTCCTGGGGATTATATTCTTTTAAGTGCAGATAAGTATGAAATCAAG
Seq A exon
GTATGTACCATATATCGTACATGTATCATTGCAATACCCAAGGGAGCAGAATACTTGAGTGCTTCTCTGATTCAGAAATAATACAGGATTTTTTCTCTCATAGTCCTTGCTTTTAAAGATATGTACAAGACAAGAAACTCTTTGGAAGCTAACTATTCACTGGTTTCCTTCATGTTTAGAATCAAATGGTAGATCAATATATATAATAAAATTCAAAATATAAGTGTTTTTTATTGTATGCCTAATATGCTTACGTGTCAGTGAGACACTTACTGCAAATACTGCTATTCTTGCGAACTGTTGGGTTGGAGGATGCTGGATGTAAATAGTTCATGGCTATGTGTTACAAGTCAGTTATAGAACTGATGTTCATATTAAAGAAGATAAATGTTTTTGAAAAACAGGCACACATTTACCTGCTGCTTTACAAGAGACTGTAAGTCTTGTTTAATTTGTGTAATAGTTTATAATTTGAGTGTTTTATGGTCTTAAACTGTTTTCTAATTCTAG
Seq C2 exon
ATTTGGCCTATTGGAAGGGAAATAAACTGCAAGTGTTTAAAAACACTGTCTGTTTCTGAAGATCGCAGCATCTCTCTACAGCCCAGATTGCACTTTGATGGTAAATACATAGTGTGCAGTTCAGCACTAGGATTATACCAGTGGGATTTTGCCAGCTATGATATTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000864:ENSGALT00000001266:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGTGCAAAGTCAAATCTCT
R:
GACAATATCATAGCTGGCAAAATCCC
Band lengths:
246-756
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]