MmuINT0063510 @ mm9
Intron Retention
Gene
ENSMUSG00000035949 | Fbxw2
Description
F-box and WD-40 domain protein 2 [Source:MGI Symbol;Acc:MGI:1353435]
Coordinates
chr2:34662798-34664120:-
Coord C1 exon
chr2:34664034-34664120
Coord A exon
chr2:34662968-34664033
Coord C2 exon
chr2:34662798-34662967
Length
1066 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCACCATCCCCCCTTTTTAGATT
3' ss Score
11.15
Exon sequences
Seq C1 exon
GTGGTTTTGCAGAAGTGCAAAGTCAAGTCTCTCTTGCACAGCCCTGGAGACTACATCCTCTTAAGTGCAGACAAATATGAGATCAAG
Seq A exon
GTAAGTTTTCTTCCTCTGTAATTTATCTCATTAAAGAAAAAAGAATACATATAAGAACTAAAAAGGGAGACTACTGCCAGGGCGAAGTCTCCCCCCCCCCCTTTCCTGAAACTAGGTTCCTTTGTGTATCCCTGGCTGGTTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGACATCCACCTGTCTTCTTCCCTTAAAGGCAGGTGCCAGCAACACCTGGCAGTTCAAGTCATCTTACACCCATTGGAAATGGTATGATTCATCTGTCTGTATGCTGAGCAGTTTCTGTGGTTTGTAAAGGAAATAAATCAAGGAGGCTAGTAAGAGTTAGTACCCGAGTTTAGATTTCCAACACCCATTAAAAAGGCTAGGAATGGTGCTGAGGAGGCAGAGATAAGAGGATCCCTGAGACTTGCTGGCCAGATAATGTAAGCAAATTGAGCTGCAATTCCGTGAGAGATCCTATTTTAGAAAATAGGGTGAGAGTGATTGAGGAAGCCACCTGACATCCACCTAGACTTCCATATGAACTCATAACTGTGCACAAACACTGGCATGTACACACACAAGAGCAAACACAGAAAATTGTTTTCCACACATTCTACTGTTTCTTTTTGTATTTTCAGAGGGCTCAGCCATGTAGCCCAGACTGAACTTGTAATCCTCCTGCCTCACAACTTAAGCACTAAGACTCTTAAGGCTCATGCCTCATACCTTCCTCATTTTTTAGATATAAACTTTGATTTGCTTTAACAGTTTGCTAATAATTTATAGGACATTCATGGTTTGTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATTTTAAAACTTTCTTTGTAGTGGGCATTATCTTTATTTAGAAAGGTTAAATAGTTTACCTAAGACCATATAGACTCAGGACTTAAGCCTGTGACTCTTGACTAAAACAGAAGTCCTGGCACTATTCCCTTTTTGTCTATTAACAGGTGCCACTTTTGTCTTTCTTTCTTCAAGCCACATTGTATAAACACCAACTTTTCTTTAGTAATCACCATCCCCCCTTTTTAG
Seq C2 exon
ATTTGGCCAATTGGGAGAGAAATCAACTGTAAGTGCTTGAAGACACTGTCTGTCTCTGAGGATAGAAGTATCTGCCTGCAGCCAAGACTTCATTTTGATGGAAAATACATTGTCTGTAGTTCAGCCCTGGGTCTGTACCAGTGGGACTTTGCCAGTTATGATATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035949-Fbxw2:NM_013890:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGTGCAAAGTCAAGTCTCTCT
R:
GAGAATATCATAACTGGCAAAGTCCC
Band lengths:
246-1312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: