BtaINT0062510 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34978429-34979444:-
Coord C1 exon
chr18:34979283-34979444
Coord A exon
chr18:34978620-34979282
Coord C2 exon
chr18:34978429-34978619
Length
663 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
TTTACCCCTTGCTTTTCCAGGTG
3' ss Score
13.39
Exon sequences
Seq C1 exon
AGCAGCGGCTTTGAGCTGAGCTACCTGGAGAAGGTGTCAGAAGTGAAGGACACGGTGCGCCGCCAGCCCCTGCTGCACCACCTGTGCGCCCTGGTGCTGCAGGCCCGGCCTGACTCCTCCGACCTGTACTCGGAGATCCCCGCCCTGGCCCGCTGCGCCAAG
Seq A exon
GTCAGCACCCGACCTCTACTCAGAAATCCCTGTCCTGGCCCGCTGCGCCAAGGTCAGCACCCAACGGGCCTGACTAAGGCTGGCCATGGCGCAAGGGGTACCGCTTCCCTCCCTCCCCCCGAGTGGGCTGCCGGGCCAGGGCTTGCTCAGGTTCCAGGCTTGTGTGTGGGCTCTGTCCTCTGCCAGAAACACTCTTCTCTTAGCCTGGCTACACCTACTCAGTTTTGGGTCTGTTTAGCTGCCACTTATCCCAGGAAGGGGCTTCCCTGGTGGCTCACATGGTAAAAGAATTTGCCCGCAATGCAGGAGACCCAGGTTCGATCCCTGGGTCAGGAAGATCCCCTGGAGGAGGGAATAGCAACCCACTCTAGTATTCTTGCCTGGAGAATCCTATGGGCAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTCAAAAAGAGTTAGACATGACTGAGCAGCGAACACTTTCACTATCCCAAGAAACCTCTATTCCCTACTGTATCACATGGACTTGCTAGTCTCTTGCAGGAGACTGGGAGCTTTTGGAGGGCAGGGGTCGGATCTGCTGTTTGCTCAGGACCCAGGCTGACCATCCCAGCACAGAGGTAGCCTTAGGCAGTGTCTTTCTGTGGGGGGATTGCATGTTTACCCCTTGCTTTTCCAG
Seq C2 exon
GTGGACTTTGAGCAGCTGACTGAGAACCTGGGGCAGCTGGAGCGCCGGAGCCGGGCAGCTGAAGACAGCCTGCGGAGCCTGACCAAGCATGATCTGGCTCCAGCCCTGCGTGCCCGCCTCACCCACTTCCTGGTGCACTGTACCCGCCGTGTTGCCATGCTGAGGGTCGTACACCGCCGTGTCTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427:ENSBTAT00000063472:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(14.2=100)
A:
NA
C2:
PF0218118=FH2=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGAGCTGAGCTACCTGG
R:
CTGTTGCAGACACGGCGG
Band lengths:
346-1009
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development