RnoINT0061041 @ rn6
Intron Retention
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37286126-37287231:-
Coord C1 exon
chr19:37287070-37287231
Coord A exon
chr19:37286317-37287069
Coord C2 exon
chr19:37286126-37286316
Length
753 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TGTACCCTCTTGCTTTTTAGGTG
3' ss Score
12.36
Exon sequences
Seq C1 exon
AGCAGTGGCTTTGAGCTGAGCTACCTGGAGAAGGTGTCAGAAGTAAAGGACACAGTGCGCCGGCAGTCACTGCTGTATCATCTCTGTTCCCTGGTGCTCCAGACCCGACCTGATTCCTCTGACCTCTACTCAGAAATTCCTGCCCTCACCCGCTGTGCCAAG
Seq A exon
GTTAGTACCAGGCAGATTCCACTAAGATTGGCTGAAATATAACTGTGTACTACTTCTTTTTTTTTCCTTAAGACTTATTTATATATTATGGTAAGCATACAAGAAGAGGGCACCAGATCTCATTATAGATGGTTGTGAGCCACCACATGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCACTCAGTGCTCTTAACCGCTGAGCCACCTCTCCAGCCCCCAGTGTACTACTTCTTGGGGTGACTTCTTCTCCTCCTCCTAATTGGGCTTCTGCGCCAGGGATTACTACTGAAGCTATGGGTATGTGAGCTATATCCTCTGCCAATGGATTTTAATGGCTTAACCACAGCCATTCCAGTTCTTTGGGCCTATTTAGTTGCTACTTCCTCCAAGTAATCTTTTCTGGTTTTGCTTGGAGCAATGGACTAGTATGCCTTGTGTATTAACTATACATTTGTTTGTTGATGCAGGGACCTAAATCCAGGGTCTTATGTAATGAAAGCAAACATTCTATACCACTGAGCTGCATCCCTACCCACCTTTTACTTTCTGAGACAGGGTCTAAGTTGCCCAGGCATACACTGAACAAACACTGTTGCCCAAACTATCCAGCCTGGACCTAGGGGCACAGCTGAGAAATGGCCTCTCCAAAGCTTACAGACCAGGCATGGCAGTGCTAACATGTGGCACTCAAGCCTCAAGTGGTGACTTACATATATAGGGAGGCTGTGTACCCTCTTGCTTTTTAG
Seq C2 exon
GTGGACTTTGAGCAGCTGACTGAGAACCTAGGGCAGCTGGAGTGCCGGAGCCAGGCTGCTGAGGACAGCCTCCGGAGCTTGGCAAAGCATGAGCTATCCCCAGCTCTGCGTGCCCGCCTTACCCACTTCCTGGCCCAATGTACCCGCCGAGTAGCCATGCTAAGAGTAGTACACCGTCGAGTCTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625:ENSRNOT00000084734:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(14.2=100)
A:
NA
C2:
PF0218118=FH2=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGAGCTGAGCTACCTGG
R:
GTTGCAGACTCGACGGTGTAC
Band lengths:
344-1097
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]