DreINT0068489 @ danRer10
Intron Retention
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34338068-34338712:+
Coord C1 exon
chr7:34338068-34338229
Coord A exon
chr7:34338230-34338521
Coord C2 exon
chr7:34338522-34338712
Length
292 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
TGCCTTGCCTTTTATCATAGGTG
3' ss Score
8.78
Exon sequences
Seq C1 exon
GCGAAGGGCTTTGAGCTCGGTTATCTGGAGAAGGTGACCGAGGTGAAGGACACTGTGCACAGACAGTCTCTGCTTCATCATACCTGCAATTTTGTGGTGGAAAATTACCCAGACACGACTGACCTTTACTCTGAGATCCCTGCTATCACACGCTCTGCTAAA
Seq A exon
GTAGGTGACTCTCTATGTGCAGTGTCTTTGTTCTGTTTGTTTCATACCTTTTAAAAGTAACATTAATTATTAAGTGGTGCAGGGGTTTTCATGCTATCCATCTTGTAGGCTTTTATAGCAGCTGCTCTGTTTCTGTAGCACATCTTGTAAAGGTTGGCATTATAACTCGGGAAGGAACTGCTGTGTTCATGGGTTTCTTTTTTGGTTCTGTTTCTGCCATTGAAGGCACTTATGGAAATATCCATTTGGCTTTTATTATCATTTATCACTCCTGCCTTGCCTTTTATCATAG
Seq C2 exon
GTGGAGTTTGAGCAATTATCTGAAAACCTGATTCAGTTGGAAAGAAAATGCAAAACGTCCTGGGACAACCTTAAAGTTGTGGCCAAGCATGAAACTAAACCCAACTTAAAAAACAAAATGACTGAATTCCTGAAAGACTGTACTGAAAGAATCATCATCCTGAAAGTAGTGCACAGACGCATTATTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768:ENSDART00000073447:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(14.4=100)
A:
NA
C2:
PF0218118=FH2=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACTGTGCACAGACAGTC
R:
TGCGTCTGTGCACTACTTTCA
Band lengths:
296-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]